Gene Information

Name : STBHUCCB_29330 (STBHUCCB_29330)
Accession : YP_005218433.1
Strain : Salmonella enterica P-stx-12
Genome accession: NC_016832
Putative virulence/resistance : Virulence
Product : Surface presentation of antigens protein spaS
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2856689 - 2857759 bp
Length : 1071 bp
Strand : -
Note : similar to surface presentation of antigens protein SpaS PRK08156; similar to Surface presentation of antigens protein spaS of Enterobacteriaceae UniRef RepID=SPAS_SALTY

DNA sequence :
ATGTCCTCGAATAAAACAGAAAAACCGACTAAAAAACGGCTGGAAGACTCCGCTAAAAAAGGCCAGTCATTTAAAAGTAA
AGATCTCATTATCGCCTGTCTGACGCTGGGAGGAATTGCCTATCTGGTGTCGTATGGCTCATTTAATGAGTTTATGGGGA
TAATTAAGATCATTATTGCGGATAATTTTGATCAGAGCATGGCTGATTACAGTTTGGCCGTTTTTGGGATAGGATTAAAA
TATCTGATTCCATTTATGCTGCTCTGTTTAGTGTGTTCCGCATTACCGGCGTTATTACAGGCCGGTTTCGTGCTGGCGAC
AGAAGCATTAAAACCTAATTTATCGGCGTTAAACCCGGTAGAAGGGGCGAAAAAACTTTTTAGTATGCGCACGGTTAAAG
ATACGGTCAAAACCCTACTGTATCTCTCATCCTTTGTGGTGGCCGCCATCATTTGCTGGAAGAAATATAAGGTTGAAATC
TTTTCTCAGTTAAATGGCAATGTTGTGGATATTGCCGTCATTTGGCGTGAACTTCTCCTCGCATTGGTATTAACTTGCCT
TGCTTGCGCATTGATTGTCTTATTATTGGATGCTATTGCGGAATATTTCCTGACCATGAAAGATATGAAAATGGATAAGG
AAGAAGTGAAGCGTGAAATGAAGGAGCAGGAAGGGAACCCAGAGGTTAAATCTAAAAGACGTGAAGTTCATATGGAAATT
CTGTCTGAACAGGTGAAATCCGATATTGAAAACTCACGCCTGATTGTTGCCAACCCCACGCATATTACGATCGGGATTTA
TTTTAAACCCGAATTGATGCCGATTCCGATGATCTCGGTGTATGAAACGAATCAGCGCGCACTGGCCGTCCGCGCCTATG
CGGAGAAGGTTGGCGTACCTGTGATCGTCGATATCAAACTGGCGCGCAGTCTTTTCAAAACCCATCGCCGTTATGATCTG
GTGAGTCTGGAAGAAATTGATGAAGTTTTACGTCTTCTGGTTTGGCTGGAAGAGGTAGAAAACGCGGGCAAAGACGTTAT
TCAGCCACAAGAAAACGAGGTACGGCATTGA

Protein sequence :
MSSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGSFNEFMGIIKIIIADNFDQSMADYSLAVFGIGLK
YLIPFMLLCLVCSALPALLQAGFVLATEALKPNLSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEI
FSQLNGNVVDIAVIWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKRREVHMEI
LSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFKTHRRYDL
VSLEEIDEVLRLLVWLEEVENAGKDVIQPQENEVRH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
spaS NP_806490.1 surface presentation of antigens protein SpaS Virulence SPI-1 Protein 2e-133 100
spaS NP_457281.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 2e-133 100
spaS YP_217806.1 surface presentation of antigens protein SpaS Virulence SPI-1 Protein 2e-132 99
spaS NP_461808.1 surface presentation of antigens protein SpaS Virulence SPI-1 Protein 6e-133 99
spaS AAS66868.1 SpaS Not tested SSR-2 Protein 2e-67 55
ECs3721 NP_311748.1 surface presentation of antigens protein SpaS Not tested LIM Protein 5e-59 54
ysaU AAS66849.1 YsaU Not tested SSR-1 Protein 2e-43 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_29330 YP_005218433.1 Surface presentation of antigens protein spaS VFG0548 Protein 2e-133 99
STBHUCCB_29330 YP_005218433.1 Surface presentation of antigens protein spaS VFG1015 Protein 2e-51 49
STBHUCCB_29330 YP_005218433.1 Surface presentation of antigens protein spaS VFG2452 Protein 3e-48 45