Gene Information

Name : STBHUCCB_29280 (STBHUCCB_29280)
Accession : YP_005218428.1
Strain : Salmonella enterica P-stx-12
Genome accession: NC_016832
Putative virulence/resistance : Virulence
Product : Cell invasion protein sipA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2849845 - 2851857 bp
Length : 2013 bp
Strand : -
Note : similar to Cell invasion protein sipA of Salmonella enterica UniRef RepID=SIPA_SALEN

DNA sequence :
ATGCAGACCGAGATCAAAACGCAGGCCACGAATCTTGCGGCGAATCTTTCCGCGGTCAGAGAAAGTGCCACAGCAACGCT
GTCAGGGGAAATTAAAGGCCAGCAACTGGAAGATTTTCCCGCGCTGATCAAACAGGCGAGTCTGGATGCGTTGTTTAAAT
GCGGGAAAGACGCCGAGGCGTTAAAAGAAGTTTTTACCAATTCAAATAATGTCGCCGGTAAGAAAGCGATAATGGAGTTT
GCCGGCCTCTTTCGTTCAGCGCTCAACGCCACCAGTGATTCTCCTGAGGCGAAGACGCTACTGATGAAGGTGGGGGCAGA
GTATACCGCGCAAATCATAAAAGATGGCCTGAAAGAAAAGTCAGCTTTTGGGCCATGGCTGCCAGAAACAAAGAAAGCGG
AAGCGAAGCTGGAAAACCTGGAAAAGCAGCTGTTAGATATCATCAAAAATAACACTGGCGGTGAATTAAGTAAATTATCG
ACGAATCTTGTTATGCAGGAGGTGATGCCCTATATTGCCAGCTGCATTGAACATAACTTTGGCTGTACGTTAGATCCGTT
AACCCGCAGCAGTCTTACGCAGCTTGTTGACAAAGCGGCGGCGAAGGCGGTTGAGGCGCTTGATATGTGCCACCAAAAAT
TAACGCAAGAGCAGGGTACCAGCGTAGGACGGGAAGCCCGGCACCTTGAAATGCAAACGTTGATACCCCTGCTGCTACGT
AATGTTTTTGCACAAATTCCTGCAGATAAACTGCCTGACCCTAAAATTCCGGAACCTGCGGCTGGACCAGTACCTGATGG
TGGGAAAAAAGCAGAACCTACGGGTATTAATATCAATATTAATATTGATAGCAGTAACCATAGCGTGGATAACAGTAAGC
ATATTAACAATAGCCGAAGCCATGTCGATAATAGCCAGCGCCATATCGATAATAGCAACCATGATAATAGCCGGAAGACG
ATTGATAATAGCCGAACATTTATTGATAACAGCCAACGCCATGGCGAGTCACACCATTCGACTAACAGCAGCAACGTAAG
TCATAGTCATTCGCGTGTGGATTCGACTACGCATCAAACGGAGACCGCACACAGCGCCAGCACAGGGACAATTGACCATG
GCATCGCGGGTAAAATTGACGTCACGGCTCATGCGACGGCAGAGGCTGTGACCAACTCTTCATCCGAAAGTAAAGATGGA
AAGGTGGTCACGTCAGAAAAGGGCACTACGGGTGAAACAACCTCTTTTGATGAAGTCGATGGCGTAACCAGCAAGAGCAT
TATCGGCAAGCCGTTACAGGCCACGGTGCACGGCGTTGATGATAATAAACAGCAAAGCCAGACGGCAGAGATTGTGAATG
TGAAGCCGCTTGCCAGTCAACTGGCTGGCGTCGAGAATGTTAAAATCGATACCTTACAATCAGACTCGACGGTAATTACA
GGTAATAAAGCCGGTACGACCGATAATGATAATAGCCAGACAGATAAGACTGGCCCATTTTCTGGTTTGAAGTTTAAGCA
AAATAGTTTCCTCTCAACAGTACCGAGCGTTACGAATATGCATTCAATACATTTCAACGCCCGTGAGGCGTTTTTGGGTG
TGATACGTAAAGCCCTGGAGCCGGATGCCTCTACACCGTTTCCTGTACGCAGAGCGTTTGACGGCTTGCGTGGGGAAATA
TTACCCAATGACACGATAAAGAGTGCAGCGTTGAAAGCGCAATGTAGCGATATTGACAAGCACCCAGAATTGAAAGCGAA
AATGGAGACGCTCAAAGAGGTCATTACTCATCATCCACAAAAAGAAAAACTGGCTGAGATTGCATTGCAGTTTGCCAGAG
AGGCGGGGTTGACCAGGCAAAAAGGGGAAACTGACTATGTGTTAAGTAATGTGCTGGACGGCCTTATCGGAGACGGTAGC
TGGCGAGCTGGCCCGGCTTACGAGTCATACCTGAATAAACCTGGTGTGGATCGGGTTATTACTACCGTTGATGGCTTGCA
CATGCAGCGTTAA

Protein sequence :
MQTEIKTQATNLAANLSAVRESATATLSGEIKGQQLEDFPALIKQASLDALFKCGKDAEALKEVFTNSNNVAGKKAIMEF
AGLFRSALNATSDSPEAKTLLMKVGAEYTAQIIKDGLKEKSAFGPWLPETKKAEAKLENLEKQLLDIIKNNTGGELSKLS
TNLVMQEVMPYIASCIEHNFGCTLDPLTRSSLTQLVDKAAAKAVEALDMCHQKLTQEQGTSVGREARHLEMQTLIPLLLR
NVFAQIPADKLPDPKIPEPAAGPVPDGGKKAEPTGINININIDSSNHSVDNSKHINNSRSHVDNSQRHIDNSNHDNSRKT
IDNSRTFIDNSQRHGESHHSTNSSNVSHSHSRVDSTTHQTETAHSASTGTIDHGIAGKIDVTAHATAEAVTNSSSESKDG
KVVTSEKGTTGETTSFDEVDGVTSKSIIGKPLQATVHGVDDNKQQSQTAEIVNVKPLASQLAGVENVKIDTLQSDSTVIT
GNKAGTTDNDNSQTDKTGPFSGLKFKQNSFLSTVPSVTNMHSIHFNAREAFLGVIRKALEPDASTPFPVRRAFDGLRGEI
LPNDTIKSAALKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIALQFAREAGLTRQKGETDYVLSNVLDGLIGDGS
WRAGPAYESYLNKPGVDRVITTVDGLHMQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sipA NP_457276.1 pathogenicity island 1 effector protein (function unknown) Virulence SPI-1 Protein 0.0 100
sipA NP_806485.1 pathogenicity island 1 effector protein Virulence SPI-1 Protein 0.0 100
sipA NP_461803.1 secreted effector protein Virulence SPI-1 Protein 0.0 98
sipA YP_217801.1 cell invasion protein Virulence SPI-1 Protein 0.0 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_29280 YP_005218428.1 Cell invasion protein sipA VFG0543 Protein 0.0 98