Gene Information

Name : STBHUCCB_29100 (STBHUCCB_29100)
Accession : YP_005218412.1
Strain : Salmonella enterica P-stx-12
Genome accession: NC_016832
Putative virulence/resistance : Virulence
Product : Transcriptional regulator sirC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2837266 - 2838153 bp
Length : 888 bp
Strand : -
Note : similar to DNA-binding transcriptional regulator GadX PRK09978; similar to Transcriptional regulator sirC of Salmonella enterica UniRef RepID=SIRC_SALTI

DNA sequence :
ATGGTATTGCCTTCAATGAATAAATCAGTTGAGGCCATTAGCAATAATCACCTTCAACAACCGAACAAATTTCCATTAAT
AAATGGATTAGCTGACGTAAGAGACTATTATGTCGCAAACTGCTTATTGTTTAAACTTAATAAAGGCAGTTTGCGAATTG
AAAACGAATTTGGGGAGTTCATCGAACAATCTGCGCTGTGTTTATTTTTATTGGAAAAAGATCAAACAATCACGCTTAGT
ATGAGCGAAATAGAAGGACATATTGATTTTTCTTCACTGGAAGTTTCCTATGACTTAATGCAAAAATTCTACAAAGTTTT
TTACAGTACAAGAAACTATAATGATCGAGAGCTATCATTAAAAACGAAACCAAAGTATTTTTTTCATGCGGACTTGTTGC
CAGGGATGAGTGATACTTTTGACTCTATTTTGCATGGTGTCGCATGTCCACGGGTTTGTAGTAATGTGAGTATTGATGAT
CATGATTATTCATATTTCTCATTGATGTATCTTATATCGGCATTTGTACGTAAGCCCGGTGGGTTTGATTTCCTTGAGCG
AGCAATAAAAATTACAACAAAAGAGAAAGTTTATAACATTATTATCAGCGATCTCACCCGCAAATGGTCACAGGCTGAGG
TGGCAGGAAAGCTGTTTATGAGCGTATCAAGTCTGAAGCGAAAACTGGCCGCTGAAGAGGTGAGTTTTAGCAAAATATAC
TTGGATGCTCGTATGAATCAGGCTATAAAATTATTACGTATGGGTGCTGGAAATATTTCACAAGTCGCGACGATGTGTGG
CTATGATACGCCTTCTTATTTTATCGCTATTTTTAAACGGCATTTTAAGATTACACCGCTTAGCTTTATGCGTACAATGA
ACCATTGA

Protein sequence :
MVLPSMNKSVEAISNNHLQQPNKFPLINGLADVRDYYVANCLLFKLNKGSLRIENEFGEFIEQSALCLFLLEKDQTITLS
MSEIEGHIDFSSLEVSYDLMQKFYKVFYSTRNYNDRELSLKTKPKYFFHADLLPGMSDTFDSILHGVACPRVCSNVSIDD
HDYSYFSLMYLISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWSQAEVAGKLFMSVSSLKRKLAAEEVSFSKIY
LDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKITPLSFMRTMNH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sprA NP_457261.1 possible AraC-family transcriptional regulator Virulence SPI-1 Protein 1e-137 100
sprA NP_806470.1 AraC family transcriptional regulator Virulence SPI-1 Protein 1e-137 100
hilC YP_217786.1 AraC family transcriptional regulator Not tested SPI-1 Protein 7e-137 99
sprA AAD37784.1 transcriptional regulator SprA Virulence SPI-1 Protein 1e-136 99
hilC NP_461788.1 invasion regulatory protein Virulence SPI-1 Protein 2e-136 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_29100 YP_005218412.1 Transcriptional regulator sirC VFG0531 Protein 7e-137 99