Gene Information

Name : STBHUCCB_29080 (STBHUCCB_29080)
Accession : YP_005218410.1
Strain : Salmonella enterica P-stx-12
Genome accession: NC_016832
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2835001 - 2835849 bp
Length : 849 bp
Strand : +
Note : similar to ABC-type Mn2+/Zn2+ transport systems, permease components COG1108'; similar to SitD of Proteobacteria UniRef RepID=Q3L7K1_ECOLX

DNA sequence :
ATGTTCTTAGCAACGTTACTGGAACCCTTTCAGTTTGATTTTATGGTGAACGCCCTTATGGTTTCGGTCATTGTGGCGAT
TCCCTGCGCCTTGCTGTCCGTGTTTTTAGTGTTAAAAGGCTGGGCGTTAATGGGCGACGCAATGAGTCATGCGGTATTCC
CCGGGGTCGTGCTGGCATATATTGTGGGGATTCCCCTGGCGATTGGCGCTTTCATTGCCGGATTATTTTGCGCTATCGCC
ACCGGTTATCTGGACGATAACAGCCGCATCAAACGTGATACGGTGATGGGCATCGTCTTTTCCGGGATGTTTGGCGCAGG
TCTGGTGCTCTATGTTTCTATTCAATCGGAAGTGCATCTGGATCACATCCTGTTTGGGGATATGCTGGGCGTATCGCTGG
GGGATATCGTACAAACGTCGGTTATTGCACTGGGTATTGCGTTAATCATAGGGCTGAAATGGAAAGATCTCCTGCTACAC
GCTTTTGACCCGCACCAGGCGAAAGCCAGCGGGCTGAATACGACGCTACTGCATTATGGCCTGCTATGTATGATTGCGCT
GACTATCGTCGCCACGCTGAAATCGGTGGGCATTATTCTGTCGATTTCATTGCTTATCGCCCCCGGCGCAATTGCCATTT
TGCTGACGCGACGCTTTGCGCGCGCGCTGGGATTAGCGGTGAGTCTGTCAGTTATTACCGCTTTTGCGGGCGTCTATCTG
TCTTTTTATCTTGATAGCGCGCCAGCGCCGACCATCGTGGTATTATTTGCCATCGTGTTTATTGCGGTATTTATTTACGC
AACATGGCGCGACAGGCGTAATGAAATCGTACCAGAGGCGCAAGGTTAA

Protein sequence :
MFLATLLEPFQFDFMVNALMVSVIVAIPCALLSVFLVLKGWALMGDAMSHAVFPGVVLAYIVGIPLAIGAFIAGLFCAIA
TGYLDDNSRIKRDTVMGIVFSGMFGAGLVLYVSIQSEVHLDHILFGDMLGVSLGDIVQTSVIALGIALIIGLKWKDLLLH
AFDPHQAKASGLNTTLLHYGLLCMIALTIVATLKSVGIILSISLLIAPGAIAILLTRRFARALGLAVSLSVITAFAGVYL
SFYLDSAPAPTIVVLFAIVFIAVFIYATWRDRRNEIVPEAQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-103 100
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-103 100
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-103 99
sitD NP_461785.1 permease Virulence SPI-1 Protein 7e-103 99
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-103 99
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-33 41
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-33 41
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 8e-34 41
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-33 41
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_29080 YP_005218410.1 hypothetical protein BAC0352 Protein 3e-103 99
STBHUCCB_29080 YP_005218410.1 hypothetical protein BAC0442 Protein 6e-55 54
STBHUCCB_29080 YP_005218410.1 hypothetical protein BAC0441 Protein 6e-34 43
STBHUCCB_29080 YP_005218410.1 hypothetical protein BAC0351 Protein 5e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_29080 YP_005218410.1 hypothetical protein VFG0528 Protein 3e-103 99
STBHUCCB_29080 YP_005218410.1 hypothetical protein VFG0527 Protein 4e-34 41