Gene Information

Name : STBHUCCB_29070 (STBHUCCB_29070)
Accession : YP_005218409.1
Strain : Salmonella enterica P-stx-12
Genome accession: NC_016832
Putative virulence/resistance : Virulence
Product : Iron-compound ABC transporter, ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2834150 - 2835010 bp
Length : 861 bp
Strand : +
Note : similar to ABC-type Mn2+/Zn2+ transport systems, permease components COG1108'; 'similar to Iron-compound ABC transporter, ATP-binding protein of Gammaproteobacteria UniRef RepID=D4ZAF3_SHEVD

DNA sequence :
ATGAACTGGCTTGTTGAGCCGTTTGGCTACCAGTATATGCTCAACGCGATGTGGGTCTCCGCGATGGTGGGCGGTCTTTG
CGCGTTTCTCTCCTGCTATTTGATGCTCAAAGGCTGGTCGCTCATTGGCGATGCGCTATCTCACTCTATTGTGCCTGGCG
TCGCTGGCGCCTGGATGTTAGGGCTGCCCTTCTCGCTCGGCGCGTTTCTTTCCGGCGGACTGGCGGCAGGCAGTATGCTC
TTTCTTAACCAACGCTCACGCCTGAAAGAAGACGCGATTATCGGGCTTATCTTCTCCTCTTTTTTTGGCGTCGGCCTTTT
TATGGTGTCGCTCAATCCGATGTCGGTGAATATCCAGACGATTATTCTCGGCAACGTGCTGGCGATCGCGCCAGCGGATA
TTACGCAACTGGCGATTATCGGCGCAGTCTCGCTGACGATTCTGCTGTTAAAGTGGAAAGATCTGATGGTCGTCTTTTTC
GATGAGACCCATGCGCGTTCTATCGGGCTTAATCCGGGTCGACTAAAATTGTTGTTTTTCACTCTATTGTCCGTCTCTAC
CGTGGCGGCCCTGCAAACCGTTGGGGCGTTCCTGGTGATCTGTCTCGTCGTCACGCCGGGCGCGACGGCCTGGTTACTCA
CCGACCGTTTTCCACGTCTGCTCATGATTGCCGTCGTGATTGGCAGCCTGACCAGTTTTCTGGGCGCATGGCTTAGCTAC
TGGCTGGATGGCGCCACTGGCGGAATTATTGTCGTCATGCAAACCTTACTGTTCATCACGGCCTTTATTTTCGCCCCGAA
ACACGGTCTGTTAGCCAACCGTCGACGCGCCCGCCTGCAGAAGGAGCCGACATGTTCTTAG

Protein sequence :
MNWLVEPFGYQYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAWMLGLPFSLGAFLSGGLAAGSML
FLNQRSRLKEDAIIGLIFSSFFGVGLFMVSLNPMSVNIQTIILGNVLAIAPADITQLAIIGAVSLTILLLKWKDLMVVFF
DETHARSIGLNPGRLKLLFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLMIAVVIGSLTSFLGAWLSY
WLDGATGGIIVVMQTLLFITAFIFAPKHGLLANRRRARLQKEPTCS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-115 100
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-115 100
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 5e-115 99
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-115 99
sitC NP_461784.1 permease Virulence SPI-1 Protein 7e-115 99
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-39 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 5e-39 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-39 41
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-39 41
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_29070 YP_005218409.1 Iron-compound ABC transporter, ATP-binding protein BAC0351 Protein 3e-115 99
STBHUCCB_29070 YP_005218409.1 Iron-compound ABC transporter, ATP-binding protein BAC0441 Protein 6e-75 66
STBHUCCB_29070 YP_005218409.1 Iron-compound ABC transporter, ATP-binding protein BAC0352 Protein 2e-39 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_29070 YP_005218409.1 Iron-compound ABC transporter, ATP-binding protein VFG0527 Protein 3e-115 99
STBHUCCB_29070 YP_005218409.1 Iron-compound ABC transporter, ATP-binding protein VFG0528 Protein 2e-39 42