Gene Information

Name : STBHUCCB_29060 (STBHUCCB_29060)
Accession : YP_005218408.1
Strain : Salmonella enterica P-stx-12
Genome accession: NC_016832
Putative virulence/resistance : Virulence
Product : ABC transporter protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2833332 - 2834153 bp
Length : 822 bp
Strand : +
Note : similar to ABC-type Mn/Zn transport systems, ATPase component COG1121'; similar to ABC transporter related protein of Proteobacteria UniRef RepID=D7AAN8_THINO

DNA sequence : 
ATGAGTCAATCTGCGATTACCGTTGATCAAGTCACGGTGACGTATCGCAACGGTCATACCGCCCTACGGGACGCTACTTT
TCAGGTGCCTGGCGGTTCAATCGCCGCGCTGGTAGGCGTAAATGGTTCCGGTAAGTCTACGTTATTTAAAGCGTTAATGG
GCTTTGTGCATCTTGCGCGGGGCGATATCACTATCCTGCAACAGTCAGTCAACCAGGCGCTGAAAAAAAACCTCATTGCT
TATGTTCCACAATCGGAAGAAGTGGACTGGTCATTTCCGGTACTGGTAGAAGATGTGGTGATGATGGGACGCTACGGTCA
TATGGGCTGGCTACGCCGTCCCACAGCGCATGATCACGCCTGTGTTGACGCCGCGCTGGCGCGGGTGGATATGCAGGAAT
ATCGTCACAGGCAGATTGGCGAGCTGTCCGGCGGGCAGAAAAAACGTGTGTTTCTTGCCAGGGCCATCGCTCAGGATGGA
CAGGTAATCCTGCTGGATGAACCTTTTACCGGCGTGGATGTAAAAACCGAAGCGCGAATCATCGATCTACTGCGGGAACT
GCGCGATGAAGGCCGCACGATGCTGGTCTCAACGCATAATCTCGGCTCCGTCACCGAATTTTGCGACTATACGGTAATGA
TTAAAGGAACCGTACTGGCCAGCGGCCCTACCGAAACCACGTTTACCGCCGCGAATCTGGAACTGGCGTTTAGCGGCGTT
CTACGTCATATCGCGCTAAGCGGAGGTGAAGAGCACATCATCACCGATGACGAGCGCCCCTTTATTTCCCGACGCGTGGC
CAGCGGAGGAAAATCGTCATGA

Protein sequence : 
MSQSAITVDQVTVTYRNGHTALRDATFQVPGGSIAALVGVNGSGKSTLFKALMGFVHLARGDITILQQSVNQALKKNLIA
YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRPTAHDHACVDAALARVDMQEYRHRQIGELSGGQKKRVFLARAIAQDG
QVILLDEPFTGVDVKTEARIIDLLRELRDEGRTMLVSTHNLGSVTEFCDYTVMIKGTVLASGPTETTFTAANLELAFSGV
LRHIALSGGEEHIITDDERPFISRRVASGGKSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 7e-128 100
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 7e-128 100
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-126 99
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-126 99
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 3e-126 99

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_29060 YP_005218408.1 ABC transporter protein BAC0350 Protein 1e-126 99
STBHUCCB_29060 YP_005218408.1 ABC transporter protein BAC0440 Protein 1e-80 63
STBHUCCB_29060 YP_005218408.1 ABC transporter protein BAC0400 Protein 7e-48 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_29060 YP_005218408.1 ABC transporter protein VFG0526 Protein 1e-126 99