Gene Information

Name : STBHUCCB_24220 (STBHUCCB_24220)
Accession : YP_005217944.1
Strain : Salmonella enterica P-stx-12
Genome accession: NC_016832
Putative virulence/resistance : Resistance
Product : Transcriptional activator ramA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2354427 - 2354768 bp
Length : 342 bp
Strand : -
Note : similar to DNA-binding transcriptional regulator SoxS PRK10219; similar to Transcriptional activator ramA of Bacteria UniRef RepID=RAMA_KLEPN

DNA sequence : 
ATGACCATTTCCGCTCAGGTTATCGACACGATTGTCGAGTGGATTGATGATAATTTGAATCAGCCGTTACGTATTGATGA
TATTGCCCGTCATGCGGGGTATTCCAAGTGGCACCTGCAGCGCCTTTTTATGCAGTACAAAGGGGAGAGTCTGAGGCGCT
ACGTGCGTGAACGGAAGCTAAAACTGGCGGCGCGCGACCTGCGCGACACCGACCAGAAGGTGTATGATATTTGTCTCAAG
TATGGTTTTGATTCGCAGCAAACCTTTACGCGCATTTTTACCCGCACGTTCAACCTGCCGCCAGGCGCTTATCGTAAAGA
AAAGCATGGCCGTACGCATTGA

Protein sequence : 
MTISAQVIDTIVEWIDDNLNQPLRIDDIARHAGYSKWHLQRLFMQYKGESLRRYVRERKLKLAARDLRDTDQKVYDICLK
YGFDSQQTFTRIFTRTFNLPPGAYRKEKHGRTH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 5e-18 48
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 4e-17 47
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 4e-17 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA CP001138.1.gene612.p Protein 3e-43 99
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA CP001918.1.gene327.p Protein 1e-18 48
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA CP000647.1.gene4499. Protein 2e-18 48
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA CP001138.1.gene4488. Protein 2e-18 48
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA NC_010558.1.6276025. Protein 2e-17 47
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA BAC0371 Protein 2e-17 45
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA NC_002695.1.914293.p Protein 2e-17 45
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA CP000647.1.gene1624. Protein 2e-17 45
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA CP000034.1.gene4505. Protein 3e-17 44
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA CP001918.1.gene2033. Protein 7e-18 44
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA NC_002695.1.917339.p Protein 6e-18 42
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA BAC0560 Protein 6e-18 42
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA CP000034.1.gene1596. Protein 5e-18 42
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA CP001138.1.gene1637. Protein 6e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA VFG0585 Protein 1e-18 48
STBHUCCB_24220 YP_005217944.1 Transcriptional activator ramA VFG1038 Protein 1e-17 47