Gene Information

Name : STBHUCCB_13610 (STBHUCCB_13610)
Accession : YP_005216919.1
Strain : Salmonella enterica P-stx-12
Genome accession: NC_016832
Putative virulence/resistance : Virulence
Product : Type III secretion low calcium response chaperone LcrH/SycD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1340904 - 1341338 bp
Length : 435 bp
Strand : +
Note : similar to Type III secretion low calcium response chaperone LcrH/SycD of Salmonella enterica UniRef RepID=B4T4U3_SALNS

DNA sequence : 
ATGATGATGAAAGAAGATCAGAAAAATAAAATACCCGAAGACATTCTGAAACAGCTATTATCCGTTGATCCGGAAACCGT
TTATGCCAGTGGTTACGCCTCATGGCAGGAGGGGGATTATTCGCGCGCCGTAATCGATTTTAGCTGGCTGGTGATGGCCC
AGCCATGGAGTTGGCGTGCCCATATTGCATTGGCTGGCACCTGGATGATGCTTAAAGAATACACGACGGCCATTAATTTC
TATGGACATGCCTTGATGCTGGATGCCAGCCATCCAGAACCGGTTTACCAAACGGGCGTCTGTCTCAAAATGATGGGGGA
ACCCGGGTTGGCGAGAGAGGCTTTTCAAACCGCAATCAAGATGAGCTATGCGGATGCCTCATGGAGTGAGATTCGCCAGA
ATGCGCAAAAAATGGTTGATACTCTTATTGCTTAA

Protein sequence : 
MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINF
YGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQKMVDTLIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sscB NP_456125.1 putative pathogenicity island protein Virulence SPI-2 Protein 4e-63 100
sscB NP_805074.1 pathogenicity island protein Virulence SPI-2 Protein 4e-63 100
SC1424 YP_216411.1 secretion system chaperone protein SscB Virulence SPI-2 Protein 2e-62 99
sscB NP_460368.1 secretion system chaperone Virulence SPI-2 Protein 2e-62 99
sscB AAC28884.1 SscB Virulence SPI-2 Protein 2e-62 99
sscB CAA12190.1 SscB Virulence SPI-2 Protein 2e-62 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_13610 YP_005216919.1 Type III secretion low calcium response chaperone LcrH/SycD VFG0504 Protein 6e-63 99