Gene Information

Name : STBHUCCB_13590 (STBHUCCB_13590)
Accession : YP_005216917.1
Strain : Salmonella enterica P-stx-12
Genome accession: NC_016832
Putative virulence/resistance : Virulence
Product : Secreted effector protein sseD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1339930 - 1340433 bp
Length : 504 bp
Strand : +
Note : similar to Secreted effector protein sseD of Salmonella enterica UniRef RepID=SSED_SALTY

DNA sequence : 
ATGGGTACTGAATCAATGCTTCTGTTATTTGATGATATCTGGATGAAGCTAATGGAGCTTGCCAAAAAGCTGCGCGATAT
CATGCGCAGCTATAACGTAGAAAAACAACGACTGTCCTGGGAACTGCAAGTCAATGTTTTGCAGACGCAAATGAAAACAA
TTGATGAAGCGTTTAGAGCATCAATGATTACTGCGGGTGGCGCCATGTTGTCGGGAGTGCTGACGATAGGATTAGGGGCT
GTAGGCGGGGAAACCGGTCTTATAGCGGGTCAAGCCGTAGGACACACCGCTGGGGGAGTCATGGGCCTGGGGTCCGGTGT
AGCGCAACGTCAAAGTGATCAAGATAAAGCGATTGCCGACCTGCAACAAAATGGGGCACAATCTTATAATAAATCCCTGA
CGGACATTATGGAGAAAGCAACTGAAATTATGCAGCAAATCATCGGCGTGGGGTCGTCACTGGTTACGGTTCTTGCTGAA
ATACTCCGGGCATTAACGAGGTAA

Protein sequence : 
MGTESMLLLFDDIWMKLMELAKKLRDIMRSYNVEKQRLSWELQVNVLQTQMKTIDEAFRASMITAGGAMLSGVLTIGLGA
VGGETGLIAGQAVGHTAGGVMGLGSGVAQRQSDQDKAIADLQQNGAQSYNKSLTDIMEKATEIMQQIIGVGSSLVTVLAE
ILRALTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseD NP_805072.1 pathogenicity island effector protein Virulence SPI-2 Protein 1e-73 100
sseD NP_456127.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 1e-73 100
sseD CAA12188.1 SseD Virulence SPI-2 Protein 2e-73 99
sseD NP_460366.1 translocation machinery component Virulence SPI-2 Protein 2e-73 99
sseD AAC28882.1 SseD Virulence SPI-2 Protein 2e-72 98
sseD YP_216409.1 secretion system effector protein SseD Virulence SPI-2 Protein 4e-71 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_13590 YP_005216917.1 Secreted effector protein sseD VFG0502 Protein 6e-74 99