Gene Information

Name : STBHUCCB_13570 (STBHUCCB_13570)
Accession : YP_005216915.1
Strain : Salmonella enterica P-stx-12
Genome accession: NC_016832
Putative virulence/resistance : Virulence
Product : Type III secretion low calcium response chaperone LcrH/SycD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1337900 - 1338373 bp
Length : 474 bp
Strand : +
Note : similar to Type III secretion low calcium response chaperone LcrH/SycD of Salmonella enterica UniRef RepID=B4TUV9_SALSV

DNA sequence : 
ATGAAAAAAGACCCGACCCTACAACAGGCACATGACACGATGCGATTTTTCCGGCGTGGCGGCTCGCTGCGTATGTTGTT
GGATGACGATGTTACACAGCCGCTTAATACTGTGTATCGCTATGCCATGCAGCTTATGGAGGTAAAAGAATTCGCCGGCG
CAGCGCGACTTTTTCAATTGCTGACGATATATGATGCCTGGTCATTTGACTACTGGTTTCGGTTAGGGGAATGCTGCCAG
GCTCAAAAACATTGGGGGGAAGCGATATACGCTTATGGACGCGCGGCACAAATTAAGATTGATGCGCCGCAGGCGCCATG
GGCCGCAGCGGAATGCTATCTCGCGTGTGATAACGTCTGTTATGCAATAAAAGCGTTAAAAGCCGTGGTGCGTATTTGCG
GCGAGGTCAGTGAACATCAAATCCTCCGACTACGTGCAGAAAAGATGTTACAGCAGCTTTCTGACAGGAGCTAA

Protein sequence : 
MKKDPTLQQAHDTMRFFRRGGSLRMLLDDDVTQPLNTVYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ
AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRLRAEKMLQQLSDRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sscA NP_456129.1 putative Type III secretion system chaperone protein Virulence SPI-2 Protein 2e-70 100
sscA NP_805070.1 type III secretion system chaperone protein Virulence SPI-2 Protein 2e-70 100
sscA CAA12186.1 SscA Virulence SPI-2 Protein 5e-69 99
sscA NP_460364.1 secretion system chaperone Virulence SPI-2 Protein 7e-69 99
SC1420 YP_216407.1 secretion system chaperone protein SscA Virulence SPI-2 Protein 2e-69 99
sscA AAC28880.1 putative secretion chaperone Virulence SPI-2 Protein 5e-69 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_13570 YP_005216915.1 Type III secretion low calcium response chaperone LcrH/SycD VFG0500 Protein 2e-69 99