Gene Information

Name : tctD (SPUL_2778)
Accession : YP_005213899.1
Strain : Salmonella enterica RKS5078
Genome accession: NC_016831
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2796051 - 2796635 bp
Length : 585 bp
Strand : -
Note : -

DNA sequence : 
TTGACGGCCTGGCGGCTGACCCATCTTCTGCACAGTGAAATGTACGCGCTGGCGGTGCTGGATATCAATATGCCGGGAAT
GGATGGACTGGAGGTGGTGCAACGGCTGCGTAAACGCGGTCAGACCTTGCCCGTTTTGCTGCTCACGGCGCGAAGCGCGG
TGGCGGATCGTGTAAAAGGTCTCAACGTCGGCGCCGATGACTATCTGCCGAAACCCTTTGAACTGGAAGAGCTGGATGCC
CGTTTACGGGCCTTGCTGCGACGCAGCGCTGGGCAGGTTCATGAAGTTCAGCAACTGGGGGAATTGATCTTTCATGATGA
AGGGTATTTTCTGTTACAGGGACAGCCGTTAGCGCTGACGCCGCGTGAGCAGGCGCTCTTAACCGTATTGATGTACCGAC
GAACGCGGCCGGTTTCGCGTCAGCAGCTTTTTGAACAGGTGTTCAGCCTGAACGATGAGGTAAGCCCTGAAAGCATCGAA
CTTTATATTCATCGACTGCGTAAAAAACTCCAGGGAAGCGATGTACGAATTACGACGCTGCGCGGCCTGGGTTATGTGCT
GGAGCGCGGCGATGAAGTGGGTTAA

Protein sequence : 
MTAWRLTHLLHSEMYALAVLDINMPGMDGLEVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDA
RLRALLRRSAGQVHEVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEVSPESIE
LYIHRLRKKLQGSDVRITTLRGLGYVLERGDEVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-22 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tctD YP_005213899.1 transcriptional regulator BAC0083 Protein 1e-22 47
tctD YP_005213899.1 transcriptional regulator BAC0487 Protein 5e-26 44
tctD YP_005213899.1 transcriptional regulator BAC0638 Protein 3e-16 43
tctD YP_005213899.1 transcriptional regulator NC_002516.2.879194.p Protein 1e-20 43
tctD YP_005213899.1 transcriptional regulator BAC0197 Protein 2e-19 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tctD YP_005213899.1 transcriptional regulator VFG0473 Protein 2e-26 46
tctD YP_005213899.1 transcriptional regulator VFG1390 Protein 2e-18 44
tctD YP_005213899.1 transcriptional regulator VFG1389 Protein 2e-16 42