Gene Information

Name : PSF113_0837 (PSF113_0837)
Accession : YP_005206264.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Unknown
Product : Phage integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1010558 - 1011814 bp
Length : 1257 bp
Strand : -
Note : -

DNA sequence : 
ATGCCTACTAACGCAACCCGCCTCTCCGATCGCCAGCTCAAGGCAGTCAAGGCAACTGGTAAAGACTTCGTCCTCAGCGA
CGGCGACGGCCTGCAGCTTCGAGTACGCGCCAGCGGCTCGATGATGTGGAATTTCAATTATCGCGAGCCGTTGACCAGAA
GCCGTCTTAATATGGCGCTCGGTCCATACCCCGACCTCTCATTAGCGAATGCTCGGAAGAAAGCAGTCGAGGCGCGAGAG
CTACTTGCTCAAGGCATTGATCCCAAAGCCCAGCGCGATGAGCAAAGGCAAGCCAGATTGGCCGAGACCGAACACACCTT
CGAGAAGATAGCCACCGCCTGGTTCGAACTGAAGAAAGACTCAGTGACGCCAGCGTATGCCGAGGACATTTGGCGTTCAC
TCACGTTGCATGTTTTTCCGAGCATGAAATCGACGCCGCTTTCTGAAGTTAGTGCTCCTATGGTGATCAAGCTCCTTCGC
CCGATTGAGGCCAAAGGCAGCCTCGAAACAGTGAAGCGGCTGAGCCAACGACTCAACGAGATCATGACCTACGGGGTCAA
TTCAGGACTGATCTTTGCGAACCCCCTCAGTGGCATTCGGGCGGTGTTCAAGAAACCCAGGAAAGAGAACATGGCCGCGC
TACGACCTGACGAGCTTCCGGAGCTCATGATGGAAATCGCGAATGCCAGCATCAAGCGAGTCACGCGCTGTCTGATCGAA
TGGCAGTTGCACACGATGACCCGTCCTGTCGAGGCAGCCACCACTCGGTGGGCAGACATCGATTTCGACAAACGCATTTG
GACCATCCCACCGGAGCGCATGAAAAAGCGTCGCCCGCATACCATCCCGCTGACTGAACAGGCACTCGCGTTACTGGAGA
CACTCAAGCCCCATAGCGGCCACAGAGAATACGTGTTCCCGGCAGATAGAAACCCGCGTACCCACGCTAATAGCCAGACC
GCCAACATGGCATTGAAACGCATGGGCTTTCAGGACCGCTTGGTCAGCCACGGCATGCGCTCCATGGCCAGCACCATCCT
GAACGAGCATGGGTGGGATCCGGAGCTGATCGAAGTCGCGCTGGCGCATATCGACAAGGACGAAGTCCGAAGCGCTTACA
ACCGAGCGGACTACATCGAGCGCCGGCGTCCGATGATGGTTTGGTGGAGTGAGCACATCCAGAAAGCGGCCACTGGCAAC
CTGTCGGCATCTGCGATCAATCAAACCAGGGACCACAACGTCGCGCCGATACGGTGA

Protein sequence : 
MPTNATRLSDRQLKAVKATGKDFVLSDGDGLQLRVRASGSMMWNFNYREPLTRSRLNMALGPYPDLSLANARKKAVEARE
LLAQGIDPKAQRDEQRQARLAETEHTFEKIATAWFELKKDSVTPAYAEDIWRSLTLHVFPSMKSTPLSEVSAPMVIKLLR
PIEAKGSLETVKRLSQRLNEIMTYGVNSGLIFANPLSGIRAVFKKPRKENMAALRPDELPELMMEIANASIKRVTRCLIE
WQLHTMTRPVEAATTRWADIDFDKRIWTIPPERMKKRRPHTIPLTEQALALLETLKPHSGHREYVFPADRNPRTHANSQT
ANMALKRMGFQDRLVSHGMRSMASTILNEHGWDPELIEVALAHIDKDEVRSAYNRADYIERRRPMMVWWSEHIQKAATGN
LSASAINQTRDHNVAPIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 3e-127 61
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 3e-127 61
int AAK20773.1 integrase Not tested VPI Protein 2e-127 61
int AAK20803.1 integrase Not tested VPI Protein 2e-127 61
unnamed AAA82714.1 integrase Not tested VPI Protein 2e-127 61
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 1e-107 53
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 1e-98 51
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 1e-98 51
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 1e-98 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSF113_0837 YP_005206264.1 Phage integrase VFG1092 Protein 6e-99 51