Gene Information

Name : fliP2 (PSF113_0766)
Accession : YP_005206192.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : protein FliP2
Function : -
COG functional category : -
COG ID : -
EC number : 3.1.1.3
Position : 925132 - 925902 bp
Length : 771 bp
Strand : +
Note : Flagellar biosynthesis protein FliP

DNA sequence :
ATGAGTGCGTCGGGTGCTTTTACCCGTGGCGTGAAACGGCTGATGCTGTCGGCCGTGTCGTTGTTCGCATTGATCACCGA
TGCGCAGGCCGAACCGGTGGTTCAAGGGCTGGCGGCCTTCACCGGGCAGGCGGGGGGCCAGCAGTGGTCACTGAGCCTGC
AAACCTTGCTGCTGCTCAGTGCCATGGCGTTCCTGCCGGCGGTGTTGCTGATGATGACCGGGTTCACTCGCATCATCATT
GTCCTGGGTTTGCTGCGCACCGCCATTGGCACGACGTCGGCGCCACCGAACCAGGTGTTATTGGGGCTGTCGCTGTTCCT
GACGTTTTTCGTCATGTCCCCGACCCTCGACCAGGCGTACGAAAAAGCCTGGCTGCCGTTCTCCAAAGACGAGATCCCGG
TGGAGCAATTCCTCGACCAGGCGAGCCAGCCGTTTCGCAAGTTCATGCTGACGCAGACGCGCCAGGGCGACCTCGCGTTG
TTTGCGCGTCTGGCCCAGATCGAGGATTTGCAGGGGCCTGAAGATGTCCCGATGCGGGTATTGCTTCCGGCCTTTGTCAC
CAGCGAGCTGAAGACCGCTTTCCAGGCCGGGTTCACCATCTTCATTCCGTTTTTGATCATCGACCTGGTAGTGGCGAGCG
TGCTGATGGCACTGGGCATGATGATGGTGCCGCCATCGACGATCTCGCTGCCGTTCAAGCTGATGCTGTTTGTGCTGGTC
GATGGCTGGCAGCTGCTGCTCGGCTCACTGGCGCAAAGTTTCTACACCTGA

Protein sequence :
MSASGAFTRGVKRLMLSAVSLFALITDAQAEPVVQGLAAFTGQAGGQQWSLSLQTLLLLSAMAFLPAVLLMMTGFTRIII
VLGLLRTAIGTTSAPPNQVLLGLSLFLTFFVMSPTLDQAYEKAWLPFSKDEIPVEQFLDQASQPFRKFMLTQTRQGDLAL
FARLAQIEDLQGPEDVPMRVLLPAFVTSELKTAFQAGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLV
DGWQLLLGSLAQSFYT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-32 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-32 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-32 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-32 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-32 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-32 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP2 YP_005206192.1 protein FliP2 VFG2338 Protein 2e-71 77
fliP2 YP_005206192.1 protein FliP2 VFG2494 Protein 3e-66 68
fliP2 YP_005206192.1 protein FliP2 VFG1259 Protein 1e-55 60
fliP2 YP_005206192.1 protein FliP2 VFG2016 Protein 2e-51 58