Gene Information

Name : dnaB (PSF113_0578)
Accession : YP_005206009.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Unknown
Product : DnaB protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 688886 - 690283 bp
Length : 1398 bp
Strand : +
Note : Replicative DNA helicase

DNA sequence :
ATGAACGAAATCACCGCTCCCGAGCAATACGATCTGCAAACCGCTGCCCTGAAGGTGCCTCCGCATTCCATCGAGGCCGA
ACAGGCCGTGCTCGGTGGCCTGATGCTGGACAACAACGCCTGGGAACGCGTGCTCGATCAAGTCTCCGATGGCGATTTCT
ACCGGCATGACCACCGGCTGATTTTCCGTGCGATCGCCAAGTTGGCCGATCAGAACATGCCGATCGACGTCGTGACCCTG
GCCGAGCAATTGGACAAGGAAGGCCAGACGTCCCAGGTCGGCGGCCTCGGTTACCTGGGCGAACTGGCGAAAAACACGCC
GTCGGTCGCCAACATCAAGGCCTATGCCCAGATCGTGCGCGAACGGGCGACCTTGCGCCAATTGATCGGCATCAGCACCG
AGATCGCCGACAGCGCCTTTAACCCGGAAGGCCGCACCGCCGCCGAGATCCTTGACGAAGCCGAACGGCAGATCTTCCAG
ATCGCCGAGGCCCGGCCGAAAACCGGCGGCCCGGTGAGCGTCAACGACCTGCTGACCAAGGCCATCGACCGCATCGACAC
CTTGTTCAATACCGACAACGCCATCACCGGCCTGTCCACCGGTTACACCGACCTCGACGAGAAGACCAGCGGCCTGCAGC
CGTCCGACCTGATTATCGTCGCCGGCCGTCCGTCCATGGGGAAAACCACCTTTGCGATGAACCTGGTGGAAAACGCTGTG
CTACGCAGCGAAAAGGCGGTGTTGGTGTACTCCCTCGAGATGCCAGGTGAATCGCTGATCATGCGTATGCTCTCGTCCCT
GGGGCGTATCGACCAGACCAAGGTTCGTTCCGGCCAACTGGAAGACGACGACTGGCCGCGCCTGACTTCGGCGGTCAACC
TGCTCAACGACCGCAAGCTGTTCATCGACGATACGGCCGGTATCAGCCCATCGGAAATGCGCGCTCGGACCCGTCGCCTG
GTGCGTGAGCACGGTGAGGTCGGGTTGATCATGATCGACTACCTGCAACTGATGCAGATCCCCGGTTCCAGCGGCGACAA
CCGGACCAACGAGATTTCCGAAATCTCCCGTTCCCTCAAGGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTGGCACTTT
CCCAGTTGAACCGCTCCCTGGAACAGCGCCCCAACAAGCGTCCGGTGAACTCCGACTTGCGGGAATCTGGAGCGATCGAG
CAGGACGCCGACGTCATCATGTTCGTGTACCGCGACGAGGTGTATCACCCCGAGACGGAGCACAAGGGCATCGCCGAAAT
CATCATCGGCAAACAGCGGAACGGCCCGATCGGCTTCATCCGCCTGGCGTTTATCGGTAAGTACACCCGGTTCGAGAACC
TGGCGCCGGGTAGCTACAATTTTGACGACGACGAATAA

Protein sequence :
MNEITAPEQYDLQTAALKVPPHSIEAEQAVLGGLMLDNNAWERVLDQVSDGDFYRHDHRLIFRAIAKLADQNMPIDVVTL
AEQLDKEGQTSQVGGLGYLGELAKNTPSVANIKAYAQIVRERATLRQLIGISTEIADSAFNPEGRTAAEILDEAERQIFQ
IAEARPKTGGPVSVNDLLTKAIDRIDTLFNTDNAITGLSTGYTDLDEKTSGLQPSDLIIVAGRPSMGKTTFAMNLVENAV
LRSEKAVLVYSLEMPGESLIMRMLSSLGRIDQTKVRSGQLEDDDWPRLTSAVNLLNDRKLFIDDTAGISPSEMRARTRRL
VREHGEVGLIMIDYLQLMQIPGSSGDNRTNEISEISRSLKALAKEFNCPVVALSQLNRSLEQRPNKRPVNSDLRESGAIE
QDADVIMFVYRDEVYHPETEHKGIAEIIIGKQRNGPIGFIRLAFIGKYTRFENLAPGSYNFDDDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 2e-120 58
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 2e-107 55
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 2e-105 52
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 6e-105 52
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 7e-105 52
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 4e-99 49
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 3e-97 47
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 3e-97 47
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 5e-79 42