Gene Information

Name : impB3 (PSF113_5828)
Accession : YP_005211197.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : protein ImpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6724862 - 6725365 bp
Length : 504 bp
Strand : -
Note : Type VI secretion system ImpB

DNA sequence : 
ATGGCCAAAGAAGGCTCGATCGCCCCCAAGGAACGCATCAACGTCACCTTCAAACCTGCCACCGGCGGTGCCCAGGAAGA
AATTGAACTGCCGTTGAAACTATTGGCGATCGGTGATTACACCCACCGCAGGGATGAACGCAAGATCGAGGACCGCAAGC
CGATTGGCATCGACAAGATGACCTTCGACGAGGTGTTGGCCAAGCAAGAGCTGAACCTGATCTTGAGCGTACCGAATCGT
CTCCAGGAAGAAAGCGAAACTGAAGAGCTGGCAGTACAGCTGCGTGTGAACTCGATGAAGGATTTCAACCCGGCTAGCCT
GGTCGAGCAAGTGCCGGAGCTCAGCAAACTGATGGAGTTGCGCGACGCCCTGATGGCGCTCAAAGGGCCATTGGGTAACG
CGCCGGCGTTTCGCAAGGCCATCGAAGGCGTACTCGGCAATGACGATTCCCGCCGCCGCGTACTGGATGAGCTGGGCCTG
AACACCACAGCTAAGAACGCTTGA

Protein sequence : 
MAKEGSIAPKERINVTFKPATGGAQEEIELPLKLLAIGDYTHRRDERKIEDRKPIGIDKMTFDEVLAKQELNLILSVPNR
LQEESETEELAVQLRVNSMKDFNPASLVEQVPELSKLMELRDALMALKGPLGNAPAFRKAIEGVLGNDDSRRRVLDELGL
NTTAKNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 6e-30 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
impB3 YP_005211197.1 protein ImpB VFG2092 Protein 9e-39 49
impB3 YP_005211197.1 protein ImpB VFG2474 Protein 9e-39 47