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Name : impC2 (PSF113_5799) Accession : YP_005211168.1 Strain : Pseudomonas fluorescens F113 Genome accession: NC_016830 Putative virulence/resistance : Virulence Product : protein ImpC Function : - COG functional category : - COG ID : - EC number : - Position : 6682674 - 6684176 bp Length : 1503 bp Strand : + Note : Type VI secretion system ImpC DNA sequence : ATGATCATGACTGACAATACCGCTCGCGAAGGCGTGCAAAACCTGGGTGCTACCCAAGAAACCAGCGAGTTCGCGTCCCT GCTGCTGCAAGAATTCAAACCCAAGACCGAGCGCGCCCGCGAAGCCGTCGAAACGGCCGTACGCACCCTGGCCGAACAGG CCCTGGCGCAGACCGACCTGGTGTCCAACGACGCCATCAAGTCGATCGAATCGATCATCGCCGCCATCGACGCCAAGCTC ACCGCCCAGGTCAACCAGGTCATCCACCACCCTGACTTCCAGCAACTGGAAAGCGCCTGGCGTGGCCTGCACTATCTGGT CAACAACACCGAGTCCGATGAGCAGCTCAAGATCCGTGTGCTCAACGTCTCCAAGACCGACCTGCACAAGACCCTGAAGA AATTCAAGGGCACCGCGTGGGACCAGAGCCCGATCTTCAAGAAGATGTACGAAGAAGAATACGGCCAGTTCGGCGGCGAG CCTTACGGCTGCCTGGTTGGCGACTACTACTTCGACCAGTCGCCACCGGATGTCGAGCTGCTGGGCGAACTGTCGAAAGT CTGCGCGGCCATGCACTCCCCGTTCATCGCTGCGGCATCGCCGACCGTGATGGGCATGGGCTCGTGGCAGGAACTGTCGA ACCCGCGCGACCTGACCAAGATCTTCACCACCCCGGAATACGCCGGCTGGCGTTCGTTGCGTGAATCGGAAGACTCGCGC TACATCGGCCTGACCATGCCACGCTTCCTGGCGCGCCTGCCGTACGGCGCCAAGACCGACCCGGTGGAAGCCTTCGCCTT CGAAGAAAACACCGACGGCGCCGACAGCTCCAAGTACACCTGGGCCAACGCCGCTTACGCGATGGCGGTGAACATCAACC GTTCGTTCAAACACTTCGGTTGGTGCTCGCGCATCCGTGGCGTGGAGTCCGGCGGTGAAGTGGAAAACCTGCCAGCCCAC ACCTTCCCGACCGACGACGGTGGCGTGGACATGAAGTGCCCGACCGAAATCGCCATCTCGGACCGCCGTGAAGCGGAACT GGCGAAGAACGGTTTCATGCCGCTGCTGCACAAGAAAAACACCGACTTCGCCGCGTTCATCGGCGCCCAGTCGTTGCAGA AACCGGCCGAATACGACGACCCGGACGCCACCGCCAACGCCAACCTGGCCGCGCGCCTGCCGTACCTGTTCGCCACTTGC CGTTTCGCCCATTACCTCAAGTGCATCGTGCGCGACAAGATCGGTTCCTTCAAAGAGAAGGACGAGATGCAGCGCTGGTT GCAGGACTGGATCCTCAACTACGTCGACGGTGACCCGGCGCACTCCACCGAGACCACCAAGGCCCAGCACCCGTTGGCTG CAGCCGAAGTGATCGTCGAAGAAGTCGAAGGCAACCCGGGGTACTACAACTCCAAGTTCTACCTGCGCCCGCACTACCAG CTCGAAGGGCTGACCGTGTCGCTGCGCCTGGTATCGAAACTGCCGTCGGCCAAGGGCGCGTAA Protein sequence : MIMTDNTAREGVQNLGATQETSEFASLLLQEFKPKTERAREAVETAVRTLAEQALAQTDLVSNDAIKSIESIIAAIDAKL TAQVNQVIHHPDFQQLESAWRGLHYLVNNTESDEQLKIRVLNVSKTDLHKTLKKFKGTAWDQSPIFKKMYEEEYGQFGGE PYGCLVGDYYFDQSPPDVELLGELSKVCAAMHSPFIAAASPTVMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSR YIGLTMPRFLARLPYGAKTDPVEAFAFEENTDGADSSKYTWANAAYAMAVNINRSFKHFGWCSRIRGVESGGEVENLPAH TFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATC RFAHYLKCIVRDKIGSFKEKDEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVIVEEVEGNPGYYNSKFYLRPHYQ LEGLTVSLRLVSKLPSAKGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec18 | YP_851426.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 6e-81 | 41 |
| aec18 | AAQ96712.1 | Aec18 | Not tested | AGI-1 | Protein | 5e-81 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| impC2 | YP_005211168.1 | protein ImpC | VFG2070 | Protein | 0.0 | 91 |
| impC2 | YP_005211168.1 | protein ImpC | VFG2475 | Protein | 5e-85 | 43 |
| impC2 | YP_005211168.1 | protein ImpC | VFG2093 | Protein | 2e-84 | 42 |
