Gene Information

Name : hrpL (PSF113_5610)
Accession : YP_005210977.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : protein HrpL
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6474697 - 6475248 bp
Length : 552 bp
Strand : +
Note : type III secretion protein HrpL

DNA sequence : 
ATGAACAGCCTGAATCTCATGCTCCCCCCGCAAACCTCCCAGGCACCCACCGGTGCGCCAGGCATCTGCTTCGGCGAGGA
GCGCAAACTGCGTCTGTTTGTGCAAAAACGTGTACTCAATCAGGACGACGCTGACGACATCATCCAACTCACGTACCTGG
AAGCCTGGCGCAACCAGCAGAAGTTCAAAGGGCTGGCAAAGCAGGACACTTGGTTGTGCGGCATCGCCCTCAACCTGATC
CGCAACCACTTCCGCCGCTTCTATGCGCAGCCGCCGCTGAGCACGTTCGATGAAAGCGAGTTCAGCGAGTCCAGTGACGA
CATCGACCTGAGTGAACTGTGCGACAACCGTCGGCTGTTGGACCGCACGCTGTCAGCCATGGACGCATTGCCCAAGGACA
TGCGCGATACCCTGTGGACCGCCGTGGACACCGAGAGCAGCTACCGCGATGCCGCCGAGCGGCTGGGCGTCCCCATTGGC
ACCGTGCGCTCAAGGTTGTTTCGTGCGCGCGAACAACTCAAGCGCAGCGTCTATGGAGAAGCCCGGCCATGA

Protein sequence : 
MNSLNLMLPPQTSQAPTGAPGICFGEERKLRLFVQKRVLNQDDADDIIQLTYLEAWRNQQKFKGLAKQDTWLCGIALNLI
RNHFRRFYAQPPLSTFDESEFSESSDDIDLSELCDNRRLLDRTLSAMDALPKDMRDTLWTAVDTESSYRDAAERLGVPIG
TVRSRLFRAREQLKRSVYGEARP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpL AAT96335.1 HrpL Virulence S-PAI Protein 9e-35 55
hrpL ABA47271.1 HrpL Virulence S-PAI Protein 6e-33 52
hrpL AAR25629.1 RNA polymerase sigma factor HrpL Not tested Not named Protein 1e-25 47
hrpL NP_791231.1 RNA polymerase sigma factor HrpL Virulence Hrp PAI Protein 1e-29 45
hrpL AAT96137.1 HrpL Virulence T-PAI Protein 5e-28 45
hrpL AAT96191.1 HrpL Virulence T-PAI Protein 5e-28 45
hrpL ABQ88350.1 HrpL Virulence Hrp PAI Protein 4e-28 45
hrpL AAA17652.1 putative alternate sigma factor Virulence Hrp PAI Protein 4e-28 45
hrpL AAG33875.2 HrpL Virulence Hrp PAI Protein 5e-29 44
hrpL AAD24681.1 sigma factor HrpL Virulence Hrp PAI Protein 1e-21 42