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Name : hrcV (PSF113_5608) Accession : YP_005210975.1 Strain : Pseudomonas fluorescens F113 Genome accession: NC_016830 Putative virulence/resistance : Virulence Product : protein HrcV Function : - COG functional category : - COG ID : - EC number : - Position : 6471176 - 6473263 bp Length : 2088 bp Strand : - Note : Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) DNA sequence : ATGATCGCCCTGTTGAACAAAGTCGCCAACGAAGCGGTGCGGCGCATCGAGGTGGTCGGAGCGTTCGTGGTGCTCGGCAT CGTGTTCATGCTGATCCTGCCCTTGCCGACCTCGGTGGTCGATGCGCTGATCGCGATCAACATCTGCATCTCCTGCCTGC TGATCGTGCTCTCGCTGTACTTGCCACGGCCGCTGGCGTTTTCCTCGTTTCCCGCGGTGCTACTACTGACCACGCTGTTT CGATTGGCATTGTCGGTGGCGACCACCCGGTTGATCCTGCTCCAGGGCGACGCCGGTCATATCGTCCAGGCGTTCGGCAA CTTCGTGGTGGGGGGCAACCTTGCCGTCGGGTTGGTCATCTTCCTCATTCTGACGGTGGTCAACTTCCTGGTGATCACCA AGGGCTCGGAGCGGGTCGCCGAAGTGGCGGCGCGCTTCACCCTGGATGCATTGCCGGGCAAGCAGATGTCCATCGACAGC GATCTGCGCGCCAACCTGATCGATGTCAGCGAAGCCCGGCGGCGTCGCGAGGAATTGAACAAGGAAAGCCAGCTGTTCGG TGCGATGGACGGGGCGATGAAGTTCGTCAAGGGCGATGCCATCGCGGGTTTGGTGATCGTGGTGATCAACCTCATCGGCG GCTTTTCGGTTGGCATGATGCAGCACGACATGGGCGCGTCCGAATCGATGCACCTGTACGCCGTGTTGACCATCGGTGAC GGTCTGATCGCGCAGATTCCGGCCCTGCTGATTTCCCTCACCGCGGGCATGATCATCACTCGGGTGTCGCCGGAAGGGCA GCCAGCGGGCAGTAGCGTCGGCAAGGAAATCGCCCAGCAGTTGACCGCCGAACCCAAGGCCTGGGTGATCGCTTCGGTGG GCATGCTCGGCTTCGCGGCCTTGCCCGGCATGCCCACGCTGGTGTTCATCGTCATCGCCTTGATCACAGGCACCGCTGGC ATCGTTCAGCTGTACTCGCGTGCCCGGCAGGCACGCCAGGGCGACCAGCCAGCGGAGGTCGTGGCCCCCGCACAGAACGG CGCTGAAGACCTGCGCAGTTTCGACCCGACCCGTGCCTATCTATTGCAGTTTTCCAAAGCCATGGAAGGCAACGCGGCCG CCGAAGAAGCCATTCAGGCGATTCGCAAGAAGCGTAACGCGCTGGTGGCCGGCTTTGGCCTGACCCTGCCGCCTTTCGAG ATCGAATACAGCGCGCTGCTGGAAGACGACGAGTTCCGCTTCTGCGTGCACGAGGTGCCGATGTTGCGGGCCACTTTCGG AGAGCGCGTGGCCGTGGCACGCGGGCCGCTGCCGTTGGAGCCGCGCGACGGGCAGGTCGGCAGCGAGGTGCGTGACGAGC AGCAGTGGCTCTGGCTGACGCCTGACGATCCGCTGCTGGCGGACGAACGCGTGGAGGCGGTGTCGGCCGCCGAGTTGCTG GTGGAGCGGATGAGCCGCGCGATGTTTGCCACGGGCCCGCAATTCTTGGGGCTTCAGGAGAGCAAGTCGATTCTCAGTTG GCTCGAAGCGGGCCAGCCAGAACTGGTGCAGGAGCTGCAGCGGACCATGCCCCTGGCCCGTTTCGCCGCCGTGCTCCAGC GCCTGGCCGGCGAAGGTGTGCCGCTGCGCGCGGTGCGGCTGATCGCCGAGTCCTTGATCGAGCATGGGCAGCATGAGCGT GACGTCGGTGCGCTGACCGACTACGCGCGCATCGCCCTGAAGTCGCAGATCTATCACCAGTACCGCGACGAAGACGGCCT GCACGTGTGGCTGTTGACGCCGGAAACCGAAGGCCTGTTGCGCGATGCGCTGCGCCAGACCCAGACGGAAACCTTTTTTG CCCTGGAAAGCCTGCACACCCGCGCCTTGGTGATGCAGTTGCGCGAAGGTTTCCCGTTGCGCGCCAAGCGCGTGGCCGTG CTGTTGGTGGCGCAAGACCTGCGGGCTCCGCTGCGCGATTTGTTGCGCGATGAATTCAATCACGTGCCCGTGCTCGCCTT CAGCGAGTTGCACAGCAACGCCCAGGTCACCGTGCTGGGGCGCTTTGACCTCGAGCAGGAAAAACTACGGATGGAGGATG CCGCATGA Protein sequence : MIALLNKVANEAVRRIEVVGAFVVLGIVFMLILPLPTSVVDALIAINICISCLLIVLSLYLPRPLAFSSFPAVLLLTTLF RLALSVATTRLILLQGDAGHIVQAFGNFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVAARFTLDALPGKQMSIDS DLRANLIDVSEARRRREELNKESQLFGAMDGAMKFVKGDAIAGLVIVVINLIGGFSVGMMQHDMGASESMHLYAVLTIGD GLIAQIPALLISLTAGMIITRVSPEGQPAGSSVGKEIAQQLTAEPKAWVIASVGMLGFAALPGMPTLVFIVIALITGTAG IVQLYSRARQARQGDQPAEVVAPAQNGAEDLRSFDPTRAYLLQFSKAMEGNAAAEEAIQAIRKKRNALVAGFGLTLPPFE IEYSALLEDDEFRFCVHEVPMLRATFGERVAVARGPLPLEPRDGQVGSEVRDEQQWLWLTPDDPLLADERVEAVSAAELL VERMSRAMFATGPQFLGLQESKSILSWLEAGQPELVQELQRTMPLARFAAVLQRLAGEGVPLRAVRLIAESLIEHGQHER DVGALTDYARIALKSQIYHQYRDEDGLHVWLLTPETEGLLRDALRQTQTETFFALESLHTRALVMQLREGFPLRAKRVAV LLVAQDLRAPLRDLLRDEFNHVPVLAFSELHSNAQVTVLGRFDLEQEKLRMEDAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 68 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 68 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 67 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 67 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 67 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 67 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 64 |
| hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 0.0 | 63 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 4e-89 | 41 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-108 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hrcV | YP_005210975.1 | protein HrcV | VFG0064 | Protein | 1e-117 | 44 |
| hrcV | YP_005210975.1 | protein HrcV | VFG0198 | Protein | 5e-94 | 41 |
| hrcV | YP_005210975.1 | protein HrcV | VFG0384 | Protein | 2e-110 | 41 |
