Gene Information

Name : hrcR (PSF113_5602)
Accession : YP_005210969.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : protein HrcR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6466046 - 6466699 bp
Length : 654 bp
Strand : -
Note : Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components)

DNA sequence :

ATGAGCTTCCAGGGGGTCGACCCCTTTCTGCTGGCGCTGTTCATCGGCGGGATTTCCTTGGTCCCCCTGCTGCTGATCAT
CTGTAGCGCCTTTCTCAAGATCGCCATCGTGTTGACGATCACCCGCAACGCCATCGGCGTGCAGCAGGTGCCACCCAATA
TGGCGCTGTATGCCATTGCCCTGGCCGCGACGCTGTTCATCATGGCGCCGGTCGGCCACAACATCGCCGAACAGTTGAAA
GAACGACCGCTGGATTTCAGCAATACCGAGGCACTGCAAGGTTCTGCGCTGAACGCGATAAAACCGTTGCAGGCTTTCAT
GTCGCGCAATACCAACCCGGACATCCTCGCTCACCTGCTGGAAAACACCCAGCGGATGTGGCCCAAGGAGCGCGCCGAAC
AGGCCAGTCGCGACGACCTGATGCTACTCATCCCGGCCTTCATGCTGTCGGAGCTCGAGGCCGGTTTCCAGATGGGATTC
CTGATTTATATCCCGTTCATTGTCATCGACCTGATCGTGTCCAACCTGCTGCTGGCGCTCGGCATGCAGATGGTCGCGCC
GATGACCATTTCGTTGCCGCTCAAGCTGCTGATTTTTGTCCTCGTGCAGGGCTGGACGCAATTGCTCGACAGCCTCTTCT
ATTCCTATCTTTGA

Protein sequence :

MSFQGVDPFLLALFIGGISLVPLLLIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAATLFIMAPVGHNIAEQLK
ERPLDFSNTEALQGSALNAIKPLQAFMSRNTNPDILAHLLENTQRMWPKERAEQASRDDLMLLIPAFMLSELEAGFQMGF
LIYIPFIVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
hrcR	ABQ88359.1	HrcR	Virulence	Hrp PAI	Protein	6e-69	74
hrpW	AAB05075.1	HrpW	Virulence	Hrp PAI	Protein	6e-69	74
hrcR	AAG33884.1	HrcR	Virulence	Hrp PAI	Protein	2e-71	73
hrcR	NP_791222.3	type III secretion protein HrcR	Virulence	Hrp PAI	Protein	1e-68	73
hrcR	ABA47279.1	HrcR	Virulence	S-PAI	Protein	4e-71	73
hrcR	AAT96146.1	HrcR	Virulence	T-PAI	Protein	1e-71	71
hrcR	AAT96262.1	HrcR	Virulence	S-PAI	Protein	5e-66	71
hrcR	AAT96200.1	HrcR	Virulence	T-PAI	Protein	8e-72	71
hrcR	AAT96303.1	HrcR	Virulence	S-PAI	Protein	5e-66	71
hrcR	AAT96343.1	HrcR	Virulence	S-PAI	Protein	5e-66	71
hrcR	AAB06005.2	HrcR	Virulence	Hrp PAI	Protein	6e-70	66
YPO0270	YP_002345352.1	type III secretion system protein	Virulence	Not named	Protein	1e-41	46
lscR	AAO18040.1	LscR	Virulence	TTSS locus	Protein	5e-44	45
escR	ACU09473.1	type III secretion system protein EscR	Virulence	LEE	Protein	8e-41	44
escR	YP_003236103.1	T3SS structure protein EscR	Virulence	LEE	Protein	1e-40	44
escR	NP_290283.1	type III secretion system protein	Virulence	LEE	Protein	1e-40	44
escR	AAK26700.1	EscR	Virulence	LEE	Protein	9e-41	44
escR	AAL57527.1	EscR	Virulence	LEE	Protein	9e-41	44
escR	CAC81847.1	EscR protein	Virulence	LEE II	Protein	9e-41	44
ECs4583	NP_312610.1	type III secretion system protein	Virulence	LEE	Protein	5e-40	44
escR	CAI43889.1	EscR protein	Virulence	LEE	Protein	9e-41	44
escR	YP_003223490.1	T3SS structure protein EscR	Virulence	LEE	Protein	1e-40	44
escR	AAC31528.1	L0049	Virulence	LEE	Protein	8e-41	44
escR	YP_003232138.1	type III secretion system protein	Virulence	LEE	Protein	1e-40	44
escR	AAC38369.1	EscR	Virulence	LEE	Protein	7e-40	44
unnamed	AAL06354.1	EscR	Virulence	LEE	Protein	5e-40	44
yscR	NP_456109.1	putative type III secretion protein	Virulence	SPI-2	Protein	3e-35	43
yscR	NP_805090.1	type III secretion system protein	Virulence	SPI-2	Protein	3e-35	43
ssaR	YP_216427.1	type III secretion system protein	Virulence	SPI-2	Protein	3e-35	43
ssaR	NP_460384.1	type III secretion system protein	Virulence	SPI-2	Protein	3e-35	43
ssaR	CAA68199.1	secretion system apparatus, SsaR	Virulence	SPI-2	Protein	2e-35	43
escR	AFO66400.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	6e-38	42
escR	AFO66317.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	6e-38	42
hrcR	BAB07862.1	HrcR	Virulence	Hrp PAI	Protein	2e-33	41
hrcR	AAP34349.1	HrcR	Virulence	Hrp PAI	Protein	9e-34	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
hrcR	YP_005210969.1	protein HrcR	VFG0044	Protein	5e-46	49
hrcR	YP_005210969.1	protein HrcR	VFG0188	Protein	3e-43	45
hrcR	YP_005210969.1	protein HrcR	VFG0394	Protein	1e-42	45
hrcR	YP_005210969.1	protein HrcR	VFG0827	Protein	4e-41	44
hrcR	YP_005210969.1	protein HrcR	VFG0715	Protein	4e-40	44
hrcR	YP_005210969.1	protein HrcR	VFG0519	Protein	1e-35	43
hrcR	YP_005210969.1	protein HrcR	VFG2338	Protein	2e-28	42
hrcR	YP_005210969.1	protein HrcR	VFG2016	Protein	5e-28	42
hrcR	YP_005210969.1	protein HrcR	VFG1773	Protein	1e-35	41