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Name : hrcU (PSF113_5599) Accession : YP_005210966.1 Strain : Pseudomonas fluorescens F113 Genome accession: NC_016830 Putative virulence/resistance : Virulence Product : protein HrcU Function : - COG functional category : - COG ID : - EC number : - Position : 6463869 - 6464969 bp Length : 1101 bp Strand : - Note : Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) DNA sequence : ATGAGCGAAGACAGTGGCGAAAAGACCAAGCGGGCGACGCCGAAGAAGATTCGCGACGCGCGCAACAAGGGCCAGGTCGG CCAAAGCCAGGACTTGAGCAGCCTGCTGGTGCTTGCGGCGATCACCGAAGTGGCATTGACCCAGGCCGACGACAGCATGC AGGCTTTGGGAGACATGGTGACATTCCCGCTGCGTCGGCTGGATGTCGACTTCGTGCGTGCCTTTGAGGAAACCTTGGCC CACGCCGGTGGCGTGCTGCTCAATTTCACCTTGATGACCGTGGGGTTGGCGATCGTCACGCGCCTGGTGGCCGGTTGGAT ACAGTTCGGTTTCCTGTTCGCCCCCGAGGCCCTTCAGCCCGACCCGAACCGCTTGAACCCGCTGAACCAGGCCAAGCAGA TGTTTTCCGGCCAGGCGCTGATCAACCTGTTCATGGGGCTGGTCAAGGCCGTGTTTATCGGCACCGTGATTTATCTGGTG ACCCTGCCGGCACTCGGGTCGTTGATCAACCTGGTCAACGGCGACCTGCACAGCTATTGGCGCGGGCTGGCCAGCCTGTT TCGGCACATCATGCACATTTGCCTGGGTGTATTGCTGGTACTGGCGATTCTCGACTTCGGCCTGCAGAAATACTTCTTCG CCAAGCGCTTGCGAATGAGCGAGGAGGAGGTGCGCAAGGAGTTCAAGGAAATGGAAGGCGACCCCCACGTAAAAATGCAT CGCCGCAGCCTGGCCCGGCAATTGGTCGACCAGCCCGTCAACAAAGAGACCAAGCCGGTGGAAGACGCCGACATGCTGGT GGTCAACCCCACCCACTTTGCCGTCGCGCTGTTGTATCGCCCCGAGGAAACGCCGCTGCCGCAGTTGATCGTCAAAGGCG TCGATGCCGAGGCCCGGGCGCTGATCGAGCGGGCCAAGGCGGCGCGGGTCCCGGTCATCCAGTGTGTCTGGCTGGCGCGC ACCATCTACCGTGAAGACGTCGGCGGTTATATCCCCCGGGAAACGCTCCAGGCGGTTGCCCATATTTATCGGGTGTTGCG CGAACTGGATGACGAGGCCAAGGGCGAGGTGATCGAGATTCCGGAATTGAACCAGCGTTGA Protein sequence : MSEDSGEKTKRATPKKIRDARNKGQVGQSQDLSSLLVLAAITEVALTQADDSMQALGDMVTFPLRRLDVDFVRAFEETLA HAGGVLLNFTLMTVGLAIVTRLVAGWIQFGFLFAPEALQPDPNRLNPLNQAKQMFSGQALINLFMGLVKAVFIGTVIYLV TLPALGSLINLVNGDLHSYWRGLASLFRHIMHICLGVLLVLAILDFGLQKYFFAKRLRMSEEEVRKEFKEMEGDPHVKMH RRSLARQLVDQPVNKETKPVEDADMLVVNPTHFAVALLYRPEETPLPQLIVKGVDAEARALIERAKAARVPVIQCVWLAR TIYREDVGGYIPRETLQAVAHIYRVLRELDDEAKGEVIEIPELNQR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcU | ABA47282.1 | HrcU | Virulence | S-PAI | Protein | 7e-94 | 58 |
| hrcU | AAT96346.1 | HrcU | Virulence | S-PAI | Protein | 4e-86 | 58 |
| hrcU | AAT96306.1 | HrcU | Virulence | S-PAI | Protein | 1e-88 | 58 |
| hrcU | AAT96265.1 | HrcU | Virulence | S-PAI | Protein | 8e-89 | 58 |
| hrcU | AAT96203.1 | HrcU | Virulence | T-PAI | Protein | 1e-93 | 56 |
| hrcU | AAT96149.1 | HrcU | Virulence | T-PAI | Protein | 1e-93 | 56 |
| hrcU | ABQ88362.1 | HrcU | Virulence | Hrp PAI | Protein | 2e-92 | 55 |
| hrpY | AAB05078.1 | HrpY | Virulence | Hrp PAI | Protein | 2e-92 | 55 |
| hrcU | NP_791219.1 | type III secretion protein HrcU | Virulence | Hrp PAI | Protein | 2e-87 | 54 |
| hrcU | AAB06008.1 | HrcU | Virulence | Hrp PAI | Protein | 2e-80 | 53 |
| hrcU | AAC35808.1 | hrp type III pathway protein | Virulence | Hrp PAI | Protein | 5e-78 | 53 |
| hrcU | AAG33887.1 | HrcU | Virulence | Hrp PAI | Protein | 5e-72 | 52 |
