Gene Information

Name : PSF113_5122 (PSF113_5122)
Accession : YP_005210496.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Unknown
Product : transposase is3 is911 family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5934597 - 5934905 bp
Length : 309 bp
Strand : +
Note : -

DNA sequence : 
ATGCGTAACTCTTATTCAACTGAATTCAAACTCAAGGCTGTCGGCATGGTATTGGACGAGGGGATATCGGTTCCCGAAGT
CTGTGCCAGTCTAGACATCGGCCCTACCGCGTTGCGTCGCTGGGTCGCCCAGGTTCGCAAAGAGCGCCTGGGTACAACGC
CGGTGGGGGCCAAAGCGATTACCGCTGACCACCGAGAGATTCAAGAACTCAAAGCCTTGCTCAGGCAAAAAGACCGGGAT
ATTGAAATCCTAAAAAAGCCAGTGCTCTGCTGCTATTGGACGCCAAAGATCATTCTCATTGATCAATGA

Protein sequence : 
MRNSYSTEFKLKAVGMVLDEGISVPEVCASLDIGPTALRRWVAQVRKERLGTTPVGAKAITADHREIQELKALLRQKDRD
IEILKKPVLCCYWTPKIILIDQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
RS05 AAP82950.1 putative transposase Not tested PAPI-2 Protein 4e-13 45
orfA YP_001217330.1 transposase OrfAB subunit A Not tested VPI-2 Protein 7e-12 41
orfA ACX47959.1 IS1359 transposase; OrfA Not tested SGI1 Protein 5e-12 41
VPI2_0009c ACA01826.1 transposase OrfAB subunit A Not tested VPI-2 Protein 5e-12 41
orfA AGK06911.1 IS1359 transposase; OrfA Not tested SGI1 Protein 5e-12 41
unnamed AGK06948.1 IS1359 transposase; OrfA Not tested SGI1 Protein 5e-12 41
orfA AGK06994.1 IS1359 transposase; OrfA Not tested SGI1 Protein 5e-12 41
orfA AGK07052.1 IS1359 transposase; OrfA Not tested SGI1 Protein 5e-12 41
VC1790 NP_231425.1 transposase OrfAB subunit A Not tested VPI-2 Protein 7e-12 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSF113_5122 YP_005210496.1 transposase is3 is911 family protein VFG1123 Protein 2e-12 41