Gene Information

Name : pilR (PSF113_5028)
Accession : YP_005210402.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : protein PilR
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.1.15
Position : 5828409 - 5829755 bp
Length : 1347 bp
Strand : +
Note : Type IV fimbriae expression regulatory protein PilR

DNA sequence : 
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAGCCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCCGGGGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAACACATCCAGCAACGCTACCCCCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCGTGACCAA
ACCAGTCGACCTGGGCCGGCTGCGGGAGCTGGTCACCAGTGCCCTGCGCCTGCCGCCGGTCGCCACGCCGGGCACCACCC
TCGAGCGCCGCCTGCTGGGCAACTCGCCACCGATGCTCAGCGTGCGCAAGCAGATCGAAAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGCCCCCGTGCCAA
CCAGCGCTTTGTACCGGTCAACTGTGGGGCGATTCCCACGGAGCTGATGGAAAGTGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAGGACAAGCCGGGGCTGTTCCAGGCCGCCCATGGCGGGACCTTGTTCCTCGATGAAGTGGCC
GACCTGCCCCTGGCGATGCAGGTCAAGCTGCTGCGAGCCATCCAGGAAAAAGCCGTGCGCGCCGTGGGCGGCCAGCAAGA
AGAAGTGGTGGATGTGCGAATTCTCTGCGCCACCCACAAGGACCTGGACGCCGAAGTCGCCGCCGGACGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTGCCGCCGTTGCGTGAACGTCGTGAAGACATCGAGCTGCTGGCC
AACCACATGCTCCAGCGCCTGGCGGCCAACACCGACAGTCCACCGGCCAGGTTGCACCCCCAGGCGTTGGACGCTCTCAG
GAATTACCGCTTCCCGGGCAATGTGCGGGAACTGGAGAACATGCTTGAACGGGCCTACACCCTTTGCGAACAGCAGCAGA
TCGAAGCGGATGACCTGCGCTTGGCCGAGGGAAATAGTACTACTGAGGCAGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAGCGCAAGCTCATCCTCCAGGCGTTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTAGGGCTGGATTGA

Protein sequence : 
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFVTKPVDLGRLRELVTSALRLPPVATPGTTLERRLLGNSPPMLSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQRFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTDSPPARLHPQALDALRNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 6e-100 50
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 6e-100 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_005210402.1 protein PilR BAC0467 Protein 5e-68 46
pilR YP_005210402.1 protein PilR BAC0089 Protein 4e-71 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_005210402.1 protein PilR VFG1214 Protein 5e-163 79
pilR YP_005210402.1 protein PilR VFG0116 Protein 4e-55 43