Gene Information

Name : pilD (PSF113_5006)
Accession : YP_005210384.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : protein PilD/XcpA
Function : -
COG functional category : -
COG ID : -
EC number : 3.4.23.-
Position : 5810841 - 5811689 bp
Length : 849 bp
Strand : +
Note : Type IV pilus leader peptidase (Prepilin peptidase) / N-methyltransferase

DNA sequence : 
GTGCTGTACCCCCTGGCTTTCGTGCTCGTTGCGGCATTGCTCGGCCTGATCATCGGCAGTTTCCTCAACGTGCTGGTGTG
GCGCCTGCCGAAGATGCTCCACCGTGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCCTGCCGGCCGAAACCCCGGGCC
CGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGCGCCTGGGAAAACATTCCGCTG
CTCAGCTACCTGATGCTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATTGGCAGGCGCTACCCCCTGACCGAATTGAC
CTGCGGTGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCACGCCGCGATGGTGATGGTGTTGACCTGGG
GCCTGCTGGGCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTGCTGCCGTTGTTGTGGCTGGGC
TTGATCATCAACAGCTTCGGGCTCTTCGTGCCCTTGAACCAGGCGATGTGGGGCGCCGTGGCCGGCTATCTGGCGCTGTG
GTCGGTGTTCTGGGTATTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGGGATTTCAAGCTGCTGGCGATGCTCG
GCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGCTGGTGGGCGCCGTTATCGGGGTCATCGTG
CTGCGCTTGCGTGATGCTCCCGGGTCGACGCAGATCCCTTTTGGACCTTATCTGGCCATTGCCGGCTGGATTGCCTTGCT
CTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA

Protein sequence : 
MLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLHREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIRAWENIPL
LSYLMLRGRCSSCAAPIGRRYPLTELTCGALSAFVAWHFGFGWHAAMVMVLTWGLLGMSLIDAEHQLLPDTLVLPLLWLG
LIINSFGLFVPLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVGAVIGVIV
LRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAE85237.1 putative prepilin peptidase A Not tested PAI V 536 Protein 4e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilD YP_005210384.1 protein PilD/XcpA VFG0114 Protein 7e-80 72
pilD YP_005210384.1 protein PilD/XcpA VFG1882 Protein 4e-46 49
pilD YP_005210384.1 protein PilD/XcpA VFG2428 Protein 1e-33 49
pilD YP_005210384.1 protein PilD/XcpA VFG0234 Protein 2e-40 48