Gene Information

Name : PSF113_4774 (PSF113_4774)
Accession : YP_005210158.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5558071 - 5558754 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence :

ATGCGCGTTCTGATTATCGAAGACGAAGAAAAAACCGCGGACTATCTGCACCGCGGCCTGACCGAACAGGGCTACACCGT
GGACGTGGCGCCGGACGGCATCGAGGGGCTGCACCTGGCCCTGGAAACCGACTATGCGGTGATCGTGCTCGACGTGATGC
TGCCGGGTCTGGACGGCTTCGGCGTACTGCGGGCCTTGCGCGCTCGCAAGCAGACCCCGGTGATCATGCTCACCGCCCGG
GAACGGGTCGAGGACCGCATCAAGGGCTTGCGCGACGGCGCCGATGATTACCTGGGCAAGCCGTTCTCCTTCCTGGAACT
GGTGGCCCGCCTGCAGGCCCTGACCCGCCGCAGCGGCGGCCATGAACCGGTGCAGGTGAGCATCGCCGACCTGTGGATCG
ACCTGATCAGCCGCAAGGCCACACGTGCCGGCCAGCGCCTGGACCTGACGGCCAAGGAGTTCTCCCTGCTCAGCGTCCTG
GCTCGCCGCCAGGGTGAAATCCTCTCGAAAACCGCCATTGCCGAAATGGTCTGGGACATCAACTTCGACAGTGACGCCAA
CGTGGTGGAAGTGGCAATCAAACGCTTGCGAGCCAAGCTCGACGGGCCGTTCGAACAGAAGTTGCTGCACACCATTCGCG
GCATGGGTTATGTGCTGGAGAATCGCAGTGATGACGCTCCCTAA

Protein sequence :

MRVLIIEDEEKTADYLHRGLTEQGYTVDVAPDGIEGLHLALETDYAVIVLDVMLPGLDGFGVLRALRARKQTPVIMLTAR
ERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSGGHEPVQVSIADLWIDLISRKATRAGQRLDLTAKEFSLLSVL
ARRQGEILSKTAIAEMVWDINFDSDANVVEVAIKRLRAKLDGPFEQKLLHTIRGMGYVLENRSDDAP

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
copR	NP_460069.2	transcriptional regulatory protein YedW	Not tested	SPI-5	Protein	9e-57	56
copR	AAC33719.1	regulatory protein CopR	Not tested	SPI-5	Protein	2e-56	55

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PSF113_4774	YP_005210158.1	DNA-binding heavy metal response regulator	BAC0197	Protein	2e-60	58
PSF113_4774	YP_005210158.1	DNA-binding heavy metal response regulator	BAC0125	Protein	3e-63	57
PSF113_4774	YP_005210158.1	DNA-binding heavy metal response regulator	BAC0083	Protein	2e-58	56
PSF113_4774	YP_005210158.1	DNA-binding heavy metal response regulator	BAC0638	Protein	1e-51	54
PSF113_4774	YP_005210158.1	DNA-binding heavy metal response regulator	BAC0111	Protein	5e-58	54
PSF113_4774	YP_005210158.1	DNA-binding heavy metal response regulator	BAC0308	Protein	9e-56	50
PSF113_4774	YP_005210158.1	DNA-binding heavy metal response regulator	BAC0347	Protein	1e-52	50
PSF113_4774	YP_005210158.1	DNA-binding heavy metal response regulator	HE999704.1.gene1528.	Protein	3e-32	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PSF113_4774	YP_005210158.1	DNA-binding heavy metal response regulator	VFG0596	Protein	3e-57	56
PSF113_4774	YP_005210158.1	DNA-binding heavy metal response regulator	VFG1389	Protein	2e-38	46
PSF113_4774	YP_005210158.1	DNA-binding heavy metal response regulator	VFG1386	Protein	9e-37	45
PSF113_4774	YP_005210158.1	DNA-binding heavy metal response regulator	VFG1390	Protein	7e-40	41