Gene Information

Name : PSF113_4660 (PSF113_4660)
Accession : YP_005210044.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : sigma-54 dependent DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.1.15
Position : 5419462 - 5420787 bp
Length : 1326 bp
Strand : +
Note : -

DNA sequence : 
ATGCTTGATTCAGTCATGGTCGTGGATGACGAAGGCAGCATTCGCAGTGCCGTCGAGCAGTGGTTGAGCCTGTCGGGGTT
CCAGGTGCAGCTGTTCAGCCGCGCCGACGAATGCCTGGCCCGGTTGCCGGAGCATTTCCCCGGGGTGATCCTCAGCGATG
TGCGCATGCCCGGCCTCAGCGGCCTGGAGTTGTTGGCCGAAGTGCGCCGCCGCGATCCAGACCTGCCGGTGATTCTGTTG
ACCGGCCACGGCGACGTGCCGATGGCCGTGGAGGCCATGCGCGACGGTGCCTACGACTTCCTGGAAAAACCCTTCAGCCC
CGAAGCCCTGCTCGGCAGCCTGCGCCGGGCCCTGGACAAGCGCACCCTGGTCCTGGAAAACCGTCGCCTGCATGAACAGG
CCGACGCCCGGGCCCGCCTCGATGGCACGCTGCTGGGGGTTTCCCGTGCGTTGCAAAACCTGCGGCGCCAGGTACTGGAC
CTGGCGGCACTGCCAGTCAACGTGTTGATCCGCGGCGAAACCGGCAGCGGCAAGGAACTGGTCGCCCGTTGCCTGCACGA
CTTCGGCCCGCGGGCGAGCAAGCCTTTCGTCGCGTTGAACTGCGCGGCCATTCCCGAACCGCTGTTCGAGGCGGAGCTGT
TCGGCCATGAAAGCGGCGCCTTCACCGGCGCCCAAGGCAAGCGCATCGGCAAGCTCGAATACGCCGACGGCGGCACGCTG
TTTCTCGACGAAATCGAGAGCATGCCCCTGGCCCAGCAGGTCAAGTTGTTGCGAGTGTTGCAGGAACAGAAGCTCGAACG
CCTGGGCTCCAACCAGAGCATCCGGGTGGACCTGCGCATCATCGCCGCCACCAAGCCCGACCTGCTGGACGAAGCCCGGG
CCGGGCGTTTTCGCGAAGACCTGGCCTATCGCCTGAACATCGCCGAGCTGCGCCTGCCGCCGCTGCGAGAACGGCGCGAG
GACATTCCCCTGCTGTTCGAACACTTCACCCACAGCGCGGCCGAACGCCTGGGCCGCTCCGCTGCGCCCCTGAGCGGCCC
GCAATTGAGCCATCTGCTCAGCCACGACTGGCCGGGCAACGTGCGGGAACTGGCCAATGTCGCCGAACGCCAGGTGTTGG
GGCTCGATCAACTGCCCGTTCTGGAGACGGAGCCGGGCCAGTCCCTCGCGGCCCAGCAGGAAGCCTTCGAAGCCCAATGC
CTGCGCGCCGCCCTGACCCGGCACAAAGGTGATGTGAAAGCCGTGCTCGAAGAGCTGCAACTGCCGCGCCGCACCTTCAA
TGAAAAGATGCAGCGGCATGGGTTGAGTCGGGAGATGTTTTTGTAG

Protein sequence : 
MLDSVMVVDDEGSIRSAVEQWLSLSGFQVQLFSRADECLARLPEHFPGVILSDVRMPGLSGLELLAEVRRRDPDLPVILL
TGHGDVPMAVEAMRDGAYDFLEKPFSPEALLGSLRRALDKRTLVLENRRLHEQADARARLDGTLLGVSRALQNLRRQVLD
LAALPVNVLIRGETGSGKELVARCLHDFGPRASKPFVALNCAAIPEPLFEAELFGHESGAFTGAQGKRIGKLEYADGGTL
FLDEIESMPLAQQVKLLRVLQEQKLERLGSNQSIRVDLRIIAATKPDLLDEARAGRFREDLAYRLNIAELRLPPLRERRE
DIPLLFEHFTHSAAERLGRSAAPLSGPQLSHLLSHDWPGNVRELANVAERQVLGLDQLPVLETEPGQSLAAQQEAFEAQC
LRAALTRHKGDVKAVLEELQLPRRTFNEKMQRHGLSREMFL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpR ABQ88368.1 HrpR Virulence Hrp PAI Protein 4e-44 43
hrpR AAA17651.1 positive regulatory factor Not tested Hrp PAI Protein 4e-44 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSF113_4660 YP_005210044.1 sigma-54 dependent DNA-binding response regulator BAC0089 Protein 2e-59 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSF113_4660 YP_005210044.1 sigma-54 dependent DNA-binding response regulator VFG1214 Protein 3e-52 46
PSF113_4660 YP_005210044.1 sigma-54 dependent DNA-binding response regulator VFG1249 Protein 2e-58 44
PSF113_4660 YP_005210044.1 sigma-54 dependent DNA-binding response regulator VFG0116 Protein 5e-44 44