Gene Information

Name : colR (PSF113_4545)
Accession : YP_005209930.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : protein ColR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5300270 - 5300953 bp
Length : 684 bp
Strand : -
Note : DNA-binding response regulator ColR

DNA sequence : 
ATGCGAATTCTATTGGTCGAAGACAACCGCGACATCCTGGCCAACCTGGCCGATTACCTGGAGCTCAAGGGCTATACCGT
CGATTGTGCCCAGGACGGTTTGTCGGGGTTGCACCTGGCCGCGACCGAACACTACGACCTGATCGTACTCGACATCATGC
TGCCGGGCATCGACGGCTATACCTTGTGCCAGCGCCTGCGCGAAGACGCCCGGCGCGATACGCCGGTGATCATGCTCACC
GCCCGGGATCAGTTGGACGATCGTCTGCAGGGCTTCAAGTCCGGGGCCGATGACTACCTGATCAAACCGTTTGCCCTGTC
AGAATTGGCAGCGCGGATCGAAGCCGTCATGCGTCGGGCCCAGGGCGGTGGCCGCCGAGCGTTGCAGGTTGGCGACCTGA
GCTACGACCTCGATACCCTGGAAGTGACGCGTGAAGGCAAGCTGCTCAAACTCAACCCCGTAGGCCTCAAGCTGCTGGCG
GTATTGATGCAGAAAAGCCCTCACGTGCTGCGCCGCGAAATCCTTGAAGAAGCGTTGTGGGGCGATGATTGCCCGGACAG
CGACAGCCTGCGCAGTCACGTCCATCAATTGCGCCAGGTGATCGACAAACCGTTCGACAAACCGTTGCTGCACACCGTAC
ACGGCGTCGGCTATCGCCTGGCCGAGGGCCGCGATGGAGTTTAA

Protein sequence : 
MRILLVEDNRDILANLADYLELKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYTLCQRLREDARRDTPVIMLT
ARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRRAQGGGRRALQVGDLSYDLDTLEVTREGKLLKLNPVGLKLLA
VLMQKSPHVLRREILEEALWGDDCPDSDSLRSHVHQLRQVIDKPFDKPLLHTVHGVGYRLAEGRDGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
colR YP_005209930.1 protein ColR BAC0487 Protein 2e-24 41
colR YP_005209930.1 protein ColR BAC0197 Protein 2e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
colR YP_005209930.1 protein ColR VFG0596 Protein 2e-30 41