Gene Information

Name : xcpR (PSF113_0439)
Accession : YP_005205868.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : protein XcpR
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.1.15
Position : 523942 - 525405 bp
Length : 1464 bp
Strand : +
Note : General secretion pathway protein E

DNA sequence : 
GTGAGCGAGCCGTTGCCCTTTGGTTTCGCCAGGCGCCTGGGGGTGCTGCTGGAAGGCGAGGGGCCGACCTTGAGCCTGGT
CATGCGCGGCGATACACCCCTGACCGCCGTGGCAGAAGTGCAGCGCCTGTGCGGTCGGGATTTGCCTATCCAGGTGCTGG
AACCGGCGCCGTTCGCCACGCGCCTGGCCAGCGTCTATCGCCAGGGCCAGAGCGCCGCCGAACAGGTCGCCCAAGGCCTG
GATGAGGAGCTTGACCTGCTCAGCCTGGCCGACCAAATGCCGCAGACCACCGACCTGCTGGAGCAGCAGGGCGATGCGCC
GATCATCCGGCTGATCAATGCCTTGCTCAGCGAGGCGGTCCGCGAACACGCGTCGGACGTGCACCTGGAAACGTTCGAAC
AGTACCTGTCGGTGCGCATGCGCATCGACGGACAGTTGCAGGAAATGCTCCGTCCGCGTCGGGAACTGGCGAGTCTGCTG
GTGTCGCGAATCAAGGTCATGGCGCGCCTGGACATCGCCGAGAAACGCGTGCCCCAGGACGGTCGAATGGCCTTGCGCCT
GGCCGGCCACGAAGTCGATGTGCGGGTCTCGACCCTGCCTTCGGCCCATGGCGAGCGCGTGGTGTTGCGCCTGCTCGACA
AGCAGGCCGGGCGCCTGGATCTGCAGCGCCTGGGCCTGCCCGACGACACCCTGGCCGGCCTGCGCCAGTTGCTCGGCAAG
CCCCACGGCATCGTGTTGGTCACCGGGCCCACGGGGTCGGGAAAAACCACCAGCCTGTACGCGGCGCTGAGCAGCATCAA
CGACCAGAGCCGCAACATCCTCACCGTCGAAGACCCCATCGAATATCACCTGCCGGGCATTGGCCAGATGCCGGTCAATC
CGAAAGTCGACATGACCTTTGCCCGCGGCCTGCGGGCCATTTTGCGCCAGGACCCGGACGTGGTGATGGTCGGCGAAATA
CGTGACCGCGAGACCGCCGAAATCGCCGTCCAGGCGTCGCTGACCGGGCACCTGGTGCTCTCGACCCTGCACACCAACAC
CGCCGTCGGCGCGGTCACACGGCTGGTGGACATGGGCGTGGATGCCTATCTGCTGGCATCGTCCCTGGCCGGCATCGTCG
CCCAGCGCTTGTTGCGCCGCCTGTGCCCGTCCTGCAAGACGGCCTATGTGGCCGACGCCGCTACGTGTCGACGTCTGGGC
CTCGACGCCGACGCCGCGCCCCGGTTGTTCAAGGCCCAGGGCTGCGAGCACTGCCAGAAGGGTTATCGCGGACGCTTCGG
TATCTATGAGCTGGTGAATGTCAGCGCCGCCCTCTCGCAGCTGATTCATCAGGGCGCCACCGAGCAGGCGCTGGCCGCCG
AGGCGCGCAAGACCTCCCGCAGCCTGTTTCAGGACGGCCGCCAGCGGGTGCTGCAAGGCCTGACCAGCGTCGATGAACTG
CTGCGCATCACCCAGGAGGATTAG

Protein sequence : 
MSEPLPFGFARRLGVLLEGEGPTLSLVMRGDTPLTAVAEVQRLCGRDLPIQVLEPAPFATRLASVYRQGQSAAEQVAQGL
DEELDLLSLADQMPQTTDLLEQQGDAPIIRLINALLSEAVREHASDVHLETFEQYLSVRMRIDGQLQEMLRPRRELASLL
VSRIKVMARLDIAEKRVPQDGRMALRLAGHEVDVRVSTLPSAHGERVVLRLLDKQAGRLDLQRLGLPDDTLAGLRQLLGK
PHGIVLVTGPTGSGKTTSLYAALSSINDQSRNILTVEDPIEYHLPGIGQMPVNPKVDMTFARGLRAILRQDPDVVMVGEI
RDRETAEIAVQASLTGHLVLSTLHTNTAVGAVTRLVDMGVDAYLLASSLAGIVAQRLLRRLCPSCKTAYVADAATCRRLG
LDADAAPRLFKAQGCEHCQKGYRGRFGIYELVNVSAALSQLIHQGATEQALAAEARKTSRSLFQDGRQRVLQGLTSVDEL
LRITQED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 2e-126 59
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 1e-126 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
xcpR YP_005205868.1 protein XcpR VFG0182 Protein 1e-144 64
xcpR YP_005205868.1 protein XcpR VFG2048 Protein 5e-127 58
xcpR YP_005205868.1 protein XcpR VFG1876 Protein 1e-127 56
xcpR YP_005205868.1 protein XcpR VFG2426 Protein 7e-77 50