Gene Information

Name : phoP (PSF113_4444)
Accession : YP_005209831.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : phoP protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5185633 - 5186310 bp
Length : 678 bp
Strand : -
Note : Transcriptional regulatory protein PhoP

DNA sequence : 
ATGAAATTACTGGTCGTCGAAGACGAAGCGCTGTTGCGTCACCACCTGCAAACCCGTCTCACCGACAGCGGCCATGTGGT
GCAGGCCGTGGCCAATGCCGAAGAGGCCTTGTACCAGGTCCGGGAATTCAACCACGACCTGGCGGTGATCGACCTGGGCC
TGCCGGGCATCAGCGGGCTGGAACTGATCCGCCGGCTGCGCTCACAGGACAAGACGTTTCCGATCCTGATCCTGACTGCC
CGCGGCAACTGGCAGGACAAGGTCGAAGGCCTGGCCGCCGGTGCCGATGACTACGTGGTCAAGCCGTTCCAGTTCGAAGA
ACTGGAGGCCCGGTTGAACGCCCTGTTGCGCCGCTCCAGTGGTTTTACCCAATCGACCATCGTGGCCGGCCCGTTGCTGC
TCGACCTCAATCGCAAGCAGGCGTCCCTCGATGAGGAACCGCTGGCATTGACGGCCTACGAGTACCGCATCCTCGAATAC
CTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGACCGCTTGATGGAGCAGCTTTACCCCGATGACGACGAGCGTGATCC
CAATGTCATCGAAGTGCTGGTCGGGCGCCTGCGCCGTAAGCTGGAAGCCCCGGCCGGCTTCAAGCCTATCGACACCGTGC
GTGGCCTGGGCTACCTGTTCAACGAGCGCTGCCAGTGA

Protein sequence : 
MKLLVVEDEALLRHHLQTRLTDSGHVVQAVANAEEALYQVREFNHDLAVIDLGLPGISGLELIRRLRSQDKTFPILILTA
RGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSGFTQSTIVAGPLLLDLNRKQASLDEEPLALTAYEYRILEY
LMRHHQQVVAKDRLMEQLYPDDDERDPNVIEVLVGRLRRKLEAPAGFKPIDTVRGLGYLFNERCQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-21 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoP YP_005209831.1 phoP protein NC_002516.2.879194.p Protein 3e-84 86
phoP YP_005209831.1 phoP protein CP001138.1.gene1939. Protein 8e-51 55
phoP YP_005209831.1 phoP protein CP000647.1.gene1136. Protein 6e-50 54
phoP YP_005209831.1 phoP protein CP000034.1.gene2022. Protein 3e-50 54
phoP YP_005209831.1 phoP protein CP001918.1.gene2526. Protein 6e-50 54
phoP YP_005209831.1 phoP protein BAC0530 Protein 5e-50 54
phoP YP_005209831.1 phoP protein NC_002695.1.913289.p Protein 3e-49 53
phoP YP_005209831.1 phoP protein CP004022.1.gene1005. Protein 2e-47 50
phoP YP_005209831.1 phoP protein BAC0487 Protein 2e-22 41
phoP YP_005209831.1 phoP protein BAC0083 Protein 8e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoP YP_005209831.1 phoP protein VFG0475 Protein 7e-51 55