Gene Information

Name : lolD (PSF113_3967)
Accession : YP_005209359.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Resistance
Product : protein LolD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4665322 - 4666020 bp
Length : 699 bp
Strand : -
Note : Lipoprotein releasing system ATP-binding protein LolD

DNA sequence : 
ATGAGTGAGTCGGGCATGAGTGAAAAAGCAATCTTGAGCTGCCGCAACCTGGGCAAATCCTACGAGGAAGGCCCGGAGTC
GGTGGTGGTGTTGTCGGGCCTGCAACTGGAGTTGCATCCTGGCGAGCGCGTGGCGATTGTCGGCACCTCCGGGTCGGGCA
AAAGTACCTTGCTCAACCTGCTGGGCGGCCTGGATACGCCAACCGCCGGCAGTGTCTGGCTGGCCGGCGAAGAGCTTTCG
GCGCTGAACGAGAAGGCCCGTGGCCTGCTGCGCAACCGTTCCCTGGGCTTCGTCTACCAGTTCCACCATTTGCTGCCCGA
GTTCACCGCGCTGGAAAACGTCTGCATGCCGCTGTTGATCGGTCGCACGGCGATTCCTGAGGCCCGTCAGCGCGCCACGG
CGTTGCTGGAGCGGGTAGGGCTGGGGCATCGCCTGGAGCACAAGCCGGCCGAGCTGTCCGGTGGCGAGCGCCAGCGCGTG
GCGATTGCCCGGGCCTTGGTCAACAAGCCTGGCCTGGTGATGCTCGACGAGCCGACCGGCAACCTCGACTCCCACACCGC
CCAAGGCATCCAGGACTTGATGCTGGAGCTCAGCACGTCGATGCGCACCGCGTTCCTGGTGGTGACCCACGACATGAACC
TGGCTCGGCAGATGGACCGCGTCCTGCACTTGCAGGAAGGTTGCCTGACGCCCATCTGA

Protein sequence : 
MSESGMSEKAILSCRNLGKSYEEGPESVVVLSGLQLELHPGERVAIVGTSGSGKSTLLNLLGGLDTPTAGSVWLAGEELS
ALNEKARGLLRNRSLGFVYQFHHLLPEFTALENVCMPLLIGRTAIPEARQRATALLERVGLGHRLEHKPAELSGGERQRV
AIARALVNKPGLVMLDEPTGNLDSHTAQGIQDLMLELSTSMRTAFLVVTHDMNLARQMDRVLHLQEGCLTPI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-27 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-27 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-27 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_005209359.1 protein LolD NC_012469.1.7686878. Protein 4e-39 43
lolD YP_005209359.1 protein LolD NC_008702.1.4606598. Protein 1e-32 43