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Name : topB (PSF113_3339) Accession : YP_005208735.1 Strain : Pseudomonas fluorescens F113 Genome accession: NC_016830 Putative virulence/resistance : Unknown Product : protein TopB Function : - COG functional category : - COG ID : - EC number : 5.99.1.2 Position : 3932424 - 3934394 bp Length : 1971 bp Strand : - Note : DNA topoisomerase III in PFGI-1-like cluster DNA sequence : ATGCGTCTCTTTCTCTGCGAGAAACCCTCCCAAGGTCGTGACATCGCCAAGGTTCTCGGAGCCAGCCGACGTGGCGATGG TTGCTTGATCGGACGCGAGACAACCGTCACCTGGTGTATCGGTCACCTGCTGGAAACGGCCCCACCTGAAGCCTATGGCG ATCAGTACAAAACCTGGTCGCTGGATCATCTACCGATTATTCCCGCGCAGTGGAGGGTTGAGGTCAAACCCAAGACTGTC GCGCAGTTCAAAATCATCAAACACCTGCTCAGCGAAGCTACCACCGTCGTCATCGCCACCGACGCCGATCGCGAAGGTGA AATGATTGCCCGCGAGTTACTAGAGCTCTGCAACTATCGTGGTTCTGTTGAGCGCCTCTGGTTGTCCGCACTCAACGAGG CGTCGATTCGCAAAGCACTGTCCTCGCTGAAGTCTAGTCAGGAGACCTTCCCGCTCTATCACTCAGCCCTCGCCCGCAGC CGCGCCGATTGGCTGATTGGTATGAACCTCAGTCGTTTGTTTACCCTCCTAGGACGGCGGGCGGGCTATGGCGCCGTGCT GTCGGTTGGACGCGTCCAAACGCCCACTTTGCGCTTGGTGGTTGAACGAGACCGCGCGATTGCCAGCTTCGTCTCGGTGC CGTACTGGGTGGTGAATGCGCACCTGTCCTCAATGGGGCAACAACCATTCATCGCATCGTGGATACCACCAAGCTCAGGA CGTGACGAAGCCGGTCGCTGCCTGCAGCAGGCGCTCGCAAGTCAAGCCCTCCAAGCGATTTCTAGCAGCAAGACCGCCAC CGTAGTCTCGCTGCGGACTGAGCATTTGCGCGAAGCGCCACCCCTGCCCTTCGACCTGAGCACACTGCAAGAAGTCTGTT CACGCAAGTTGGGACTCGGCGCTCAGGAAACGCTGAACATCGCTCAAGCCTTGTATGAAACCCACAAAGCCACCAGCTAT CCGCGCAGCGATTGCCGCTATTTGCCAGAGAGCATGTTCAACGAGGTCGCCGCGGTATTCGATGCCCTGCTCAGAATGGA CCCCGCGTTACGCCCAGCGCTCGGAAGCATCGATCAATCATTGCGCTCACGAGCATGGAACGATGCCAAGGTCACCGCGC ACCACGGCATCATCCCCACCACCGAGCCGGCGAACCTTGGGCGGATGTCTGAACAAGAGCGCCAAGTCTACGAACTGATT CGTAGCCACTACCTCGCGCAATTCCTGCCGCATCACGAGTTTGATCGAACCGAGGTCGAACTGGAGTGCAGCGCCGAGCG TTTGACTGCTGTTGGCAAACAGATCCTCGTCCAAGGCTGGAAAGGCTTACTCTCCGACAACCCCGACGATGATGAACCTA GTCAAAAGTCCCAGGTGTTGCCCGCCCTACAACAGGGTAGGCAGTGCGCAGTGGACGACGTTGAACTCAAATCCATGCGC ACCGCTGCGCCCAAATCGCTCACCGAGGGCGATCTGATCAAGGCGATGAAAAACGTCGCCAAGCTGGTCAACGACCCGCG CCTTAAACAGAAACTTCGGGATACCACCGGTATCGGCACGGAAGCCACGCGAGCCGGCATCATCAAGGGCTTGATTGATC GCGGTTACTTGCTGAAGAAAAAACGTGCCTTAATGGCCTCCGCAACGGCCCATACGCTGATCGAAGCGGTACCCGCTGCA GTCGCGGATCCGGGTATGACAGCGATCTGGGAGCAAGCGCTGGATGAAATCGAAGCGGGACGTCTGAGCTTGGATGCATT CGTTGCCAAGCAGGCGCACTGGATTACGCAGCTGATCGCAAACTGCGGAGCGCTTACCTTGTCGGTACCGGTCGAAGCCG GGCCTGTCTGCCCCATTTGCAACGCATCAATGCTTAGGCGGAAGGGTAAATCAGGGCCGTTCTGGTCATGCTCCCACTAC CCAGACTGCAAAGGCACTGTGCCGATCAGTAAAGGTATACGTCGTCCATGA Protein sequence : MRLFLCEKPSQGRDIAKVLGASRRGDGCLIGRETTVTWCIGHLLETAPPEAYGDQYKTWSLDHLPIIPAQWRVEVKPKTV AQFKIIKHLLSEATTVVIATDADREGEMIARELLELCNYRGSVERLWLSALNEASIRKALSSLKSSQETFPLYHSALARS RADWLIGMNLSRLFTLLGRRAGYGAVLSVGRVQTPTLRLVVERDRAIASFVSVPYWVVNAHLSSMGQQPFIASWIPPSSG RDEAGRCLQQALASQALQAISSSKTATVVSLRTEHLREAPPLPFDLSTLQEVCSRKLGLGAQETLNIAQALYETHKATSY PRSDCRYLPESMFNEVAAVFDALLRMDPALRPALGSIDQSLRSRAWNDAKVTAHHGIIPTTEPANLGRMSEQERQVYELI RSHYLAQFLPHHEFDRTEVELECSAERLTAVGKQILVQGWKGLLSDNPDDDEPSQKSQVLPALQQGRQCAVDDVELKSMR TAAPKSLTEGDLIKAMKNVAKLVNDPRLKQKLRDTTGIGTEATRAGIIKGLIDRGYLLKKKRALMASATAHTLIEAVPAA VADPGMTAIWEQALDEIEAGRLSLDAFVAKQAHWITQLIANCGALTLSVPVEAGPVCPICNASMLRRKGKSGPFWSCSHY PDCKGTVPISKGIRRP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 65 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 65 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 64 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 3e-169 | 52 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 3e-169 | 52 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 2e-169 | 52 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 2e-163 | 50 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 4e-164 | 50 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 2e-130 | 41 |
