Gene Information

Name : qseB (PSF113_3085)
Accession : YP_005208482.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : protein QseB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3642720 - 3643382 bp
Length : 663 bp
Strand : +
Note : Two-component system response regulator QseB

DNA sequence : 
GTGCGTTTATTACTGATCGAGGATGACGTGGCCTTGGGCGAGGGCATCCATCAGGCCCTGAGTCGCGAAGGCTATACCGT
CGACTGGGTACAGGACGGCAGCAGCGCCTTGCATTCGCTGCTCAGTGAAACTTTCGACCTGGCGGTGCTTGACCTTGGCT
TGCCACGCATGGACGGCCTGCAAGTGTTGCGGCGCTTGCGTGACAGTGGCTCCAACCTGCCGGTGCTGATCCTCACCGCC
CGGGATGCCACCGAGGATCGCATCGCCGGGTTGGACGCCGGGGCCGATGATTATCTGGTCAAGCCCTTCGACCTGGCGGA
GCTCAAGGCCCGGCTACGGGCCTTGTTGCGCCGCAGCGCCGGCCGCGCCCAGGCGTTGATCGAACATGCCGGCATCAGCC
TGAACCCCGTTACCCAACAAGTCAGTTACCAGGGCAAGCCGGTGGCCCTGACCCCCAAGGAATATCAACTGCTCCATGAA
CTGCTCTCGCCGCCGGGCCGCGTCATGACTCGCGATCATCTGATGCAGTTGCTCTACGGCTGGAGCGAGGAGGCCGAGAG
CAACACGCTGGAAGTGCACATCCATCACCTGCGCAAGAAATTCTCCACCGACCTGATCCGCACCATTCGCGGGGTCGGTT
ACCTGGTGGAGGAGCGCCGATGA

Protein sequence : 
MRLLLIEDDVALGEGIHQALSREGYTVDWVQDGSSALHSLLSETFDLAVLDLGLPRMDGLQVLRRLRDSGSNLPVLILTA
RDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSAGRAQALIEHAGISLNPVTQQVSYQGKPVALTPKEYQLLHE
LLSPPGRVMTRDHLMQLLYGWSEEAESNTLEVHIHHLRKKFSTDLIRTIRGVGYLVEERR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-33 48
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-29 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_005208482.1 protein QseB BAC0487 Protein 2e-35 49
qseB YP_005208482.1 protein QseB NC_002516.2.879194.p Protein 7e-29 44
qseB YP_005208482.1 protein QseB AE015929.1.gene1106. Protein 2e-24 41
qseB YP_005208482.1 protein QseB BAC0308 Protein 2e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_005208482.1 protein QseB VFG0473 Protein 3e-36 50
qseB YP_005208482.1 protein QseB VFG0596 Protein 2e-29 42