Gene Information

Name : PSF113_2884 (PSF113_2884)
Accession : YP_005208283.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3394887 - 3395591 bp
Length : 705 bp
Strand : -
Note : -

DNA sequence : 
ATGCGTTTGCTCATTGTCGAGGACGAAGAAAAAACCTCCTCCTACGTCCATCGTGGCTTGACCGAGCTCGGCTACATTGT
CGACGTTGCCACGAATGGTATTGATGGCCTGCATTACGCGTTGGAATGGGATTACGACGTGGTGATCCTGGATGTGATGT
TGCCGGGCAAGGACGGCTACGACGTGTTGCAAGGCCTGCGCCTGCACAAGAAAACCCCGGTCATCATGTTGTCGGCCAGG
GGGACGGTGGATGACCGCATTCGAGGACTGCGCGAGGGCGCCGATGATTACCTGGGCAAGCCTTTTTCGTTTGCCGAACT
TGTCGCACGCATCCAGGCCTTGATCCGTCGTCGCGCCGGTGACACGCTTGACCTGACGCATTTGCGCATCGACGACCTGG
AGGTCGATCTGCAAGCGCGCAAGGTGACCCGGGGAGGGCTGCGGCTGGACCTGACGGCCAAGGAGTTCTCCCTGTTAAGC
CTGTTGGCGCGGCATCAGGGCGAGATCCTTTCCAAGTTGATGATTGCCGAGCAGGTCTGGGACATGAATTTCGACAGTGA
TGCCAACGTGGTCGAGGTTGCGATCAAGCGCGTCCGCGCCAAGGTGGATACCCCGTATCCGCGCAAGCTGCTACATACCG
TCCGCGGCATGGGGTATGTACTGGAAAGCCGAGAGGCAGATGGCAGGCAAACGGGTACGCCTTGA

Protein sequence : 
MRLLIVEDEEKTSSYVHRGLTELGYIVDVATNGIDGLHYALEWDYDVVILDVMLPGKDGYDVLQGLRLHKKTPVIMLSAR
GTVDDRIRGLREGADDYLGKPFSFAELVARIQALIRRRAGDTLDLTHLRIDDLEVDLQARKVTRGGLRLDLTAKEFSLLS
LLARHQGEILSKLMIAEQVWDMNFDSDANVVEVAIKRVRAKVDTPYPRKLLHTVRGMGYVLESREADGRQTGTP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-54 51
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-53 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSF113_2884 YP_005208283.1 DNA-binding heavy metal response regulator BAC0197 Protein 3e-58 58
PSF113_2884 YP_005208283.1 DNA-binding heavy metal response regulator BAC0125 Protein 4e-59 57
PSF113_2884 YP_005208283.1 DNA-binding heavy metal response regulator BAC0083 Protein 5e-57 56
PSF113_2884 YP_005208283.1 DNA-binding heavy metal response regulator BAC0638 Protein 9e-52 55
PSF113_2884 YP_005208283.1 DNA-binding heavy metal response regulator BAC0111 Protein 2e-59 53
PSF113_2884 YP_005208283.1 DNA-binding heavy metal response regulator BAC0347 Protein 8e-52 51
PSF113_2884 YP_005208283.1 DNA-binding heavy metal response regulator BAC0308 Protein 4e-49 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSF113_2884 YP_005208283.1 DNA-binding heavy metal response regulator VFG0596 Protein 2e-54 51
PSF113_2884 YP_005208283.1 DNA-binding heavy metal response regulator VFG1389 Protein 2e-37 44
PSF113_2884 YP_005208283.1 DNA-binding heavy metal response regulator VFG1386 Protein 9e-33 41