|
Name : impC (PSF113_2416) Accession : YP_005207820.1 Strain : Pseudomonas fluorescens F113 Genome accession: NC_016830 Putative virulence/resistance : Virulence Product : protein ImpC Function : - COG functional category : - COG ID : - EC number : - Position : 2816880 - 2818361 bp Length : 1482 bp Strand : - Note : type VI secretion protein ImpC DNA sequence : ATGCCTGCTTCATCCAGCGCTCAAACCAGCGAGAGCACGACCCAGACCCTGTCCCTGCTGGACAAGATCATCGCCGAGGG CCGCATGGCCCACGACGACAGCCAGCAAGATTACGCCCGCGACATGCTGGCCGAATTCGCCACCCAGGTCCTCGACGAAG GCATGGCCATCGACAAGGACACCGTGGCGATGATCAACGACCGCATCAGCCAGATCGATCAGCTGATCAGCGCCCAGCTC AACGAAGTGCTGCACCATCCCGACCTGCAGAAACTCGAAGCCTCCTGGCGCGGCCTGCACCTGCTGGTGCAGAACACCGA AACCAGCACCCGGCTCAAATTGCGCCTGCTCAACGTCACCCAGAAAGAACTGCAGAACGATCTGGAAAAAGCCGTCGAAT TCGACCAGAGCGCGCTGTTCAAGAAGATCTACGAGGAAGAATACGGCACCTTCGGCGGCCACCCGTTCAGCCTGCTGGTG GGTGACTACACCTTTGGCCGGCATCCGCAGGACATCGGCCTGCTGGAAAAACTCTCAAACGTCGCCGCCGCCGCGCACGC GCCTTTCATTGCCGCCGCCAGCCCGCGGTTGTTCGACATGACCAGCTTCACCGAACTGGCGATACCCAGGGATCTGTCGA AGATTTTCGAGAGCCAGGAGTTGATCAAGTGGCGCGCCTTCCGTGAAAGCGAAGACTCGCGCTACGTGTCCCTGGTGCTG CCGCACTTCCTGCTGCGCCTGCCGTACGGCCCGGACACGCTGCCGGTGGAAGGCATCAACTACGTCGAAGACGTCAACGG CACCGACCACAGCAAATACCTGTGGGGCAACGCCGCCTGGACCCTGGCGCAACGCATCACCGAAGCCTTTGCCAAATATG GCTGGTGCGCAGCCATTCGCGGGGCCGAGGGCGGTGGCGCGGTCGAAGGCCTGCCGGCCCATACGTTCCGCACCAGCTCC GGAGACCTGTCGCTCAAATGCCCGACCGAAGTGGCGATCACCGACCGCCGCGAAAAAGAACTCAACGACCTGGGCTTCAT CTCCCTGTGCCACAAGAAAAACAGCGACGTGGCGGTGTTCTTCGGCGGCCAGACCACCAACAAGGCCAAGCTCTACAACA CCAACGAGGCCAACGCCAACGCGCGGATCTCGGCAATGTTGCCGTACGTGCTGGCGGCCTCGCGTTTCGCCCATTACCTG AAGGTGATCATGCGTGACAAGGTCGGCAGTTTCATGACCCGCGACAACGTGCAGACCTACCTCAACAACTGGATCGCCGA CTACGTGCTGATCAACGATAACGCGCCGCAAGAGATCAAGGCGCAGTACCCGTTGCGCGAAGCACGGGTGGACGTGACGG AAGTGGCCGGCAAGCCAGGCGCCTACAAGGCCACGGTGTTCCTGCGGCCGCACTTCCAACTGGAGGAGTTGACCGCCTCG ATCCGCCTGGTGGCGACCCTGCCGCCGCCGGTAGCTGCCTGA Protein sequence : MPASSSAQTSESTTQTLSLLDKIIAEGRMAHDDSQQDYARDMLAEFATQVLDEGMAIDKDTVAMINDRISQIDQLISAQL NEVLHHPDLQKLEASWRGLHLLVQNTETSTRLKLRLLNVTQKELQNDLEKAVEFDQSALFKKIYEEEYGTFGGHPFSLLV GDYTFGRHPQDIGLLEKLSNVAAAAHAPFIAAASPRLFDMTSFTELAIPRDLSKIFESQELIKWRAFRESEDSRYVSLVL PHFLLRLPYGPDTLPVEGINYVEDVNGTDHSKYLWGNAAWTLAQRITEAFAKYGWCAAIRGAEGGGAVEGLPAHTFRTSS GDLSLKCPTEVAITDRREKELNDLGFISLCHKKNSDVAVFFGGQTTNKAKLYNTNEANANARISAMLPYVLAASRFAHYL KVIMRDKVGSFMTRDNVQTYLNNWIADYVLINDNAPQEIKAQYPLREARVDVTEVAGKPGAYKATVFLRPHFQLEELTAS IRLVATLPPPVAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec18 | AAQ96712.1 | Aec18 | Not tested | AGI-1 | Protein | 1e-88 | 41 |
| aec18 | YP_851426.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 2e-88 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| impC | YP_005207820.1 | protein ImpC | VFG2070 | Protein | 3e-111 | 51 |
| impC | YP_005207820.1 | protein ImpC | VFG2475 | Protein | 1e-96 | 42 |
| impC | YP_005207820.1 | protein ImpC | VFG2093 | Protein | 2e-95 | 41 |
