Gene Information

Name : PSF113_2366 (PSF113_2366)
Accession : YP_005207772.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2755072 - 2755755 bp
Length : 684 bp
Strand : -
Note : -

DNA sequence : 
ATGAACCGCATCCTGACCATCGAAGACGACGCCGTGACCGCCCGTGAAATCGTCGCCGAGCTGACCCGCAACGGCCTGGA
CGTCGATTGGGTCGACAACGGCCGCGAAGGCCTGGAACGGGCAGTGAGCGGCGACTACGACCTGATCACCCTCGACCGCA
TGCTGCCCGAGCTCGACGGCCTGGTGATCGTCACCACGCTGCGCACCATGGGCGTGGCTACGCCGATCCTGATGATCAGC
GCCCTCTCCGACGTGGATGAGCGGGTCCGTGGCCTGCGGGCCGGTGGCGACGACTACCTGACCAAGCCGTTCGCCACCGA
CGAAATGGCCGCCCGGGTCGAGGTGTTGCTGCGACGCAACAACGGCCCCCGCGAGCCGGAAACCGTGCTGCGGGTGGCCG
ACCTGGAGCTGAACCTGATCAGCCGCGAAGCCAGCCGCAACGGCCAGTTGCTCAACCTGCTGCCCACCGAGTACAAGCTG
CTGGAATTCCTGATGCGCAACAGTGGGCAGATCCTCTCGCGCATGATGATTTTCGAGGAAGTCTGGGGCTATCACTTCGA
CCCAGGCACCAACCTGATCGACGTCCACATTGGCCGCCTGCGCAAGAAGATCGACCCGCCGGGCCTGGAACCGCTGATTC
GCACGGTACGGGGCTCCGGCTATGTCATTGCTGAACCCCGCTAA

Protein sequence : 
MNRILTIEDDAVTAREIVAELTRNGLDVDWVDNGREGLERAVSGDYDLITLDRMLPELDGLVIVTTLRTMGVATPILMIS
ALSDVDERVRGLRAGGDDYLTKPFATDEMAARVEVLLRRNNGPREPETVLRVADLELNLISREASRNGQLLNLLPTEYKL
LEFLMRNSGQILSRMMIFEEVWGYHFDPGTNLIDVHIGRLRKKIDPPGLEPLIRTVRGSGYVIAEPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-31 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-31 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSF113_2366 YP_005207772.1 DNA-binding response regulator BAC0197 Protein 3e-41 47
PSF113_2366 YP_005207772.1 DNA-binding response regulator BAC0111 Protein 6e-42 46
PSF113_2366 YP_005207772.1 DNA-binding response regulator BAC0308 Protein 1e-41 45
PSF113_2366 YP_005207772.1 DNA-binding response regulator BAC0347 Protein 1e-39 45
PSF113_2366 YP_005207772.1 DNA-binding response regulator BAC0125 Protein 1e-39 44
PSF113_2366 YP_005207772.1 DNA-binding response regulator BAC0083 Protein 3e-40 42
PSF113_2366 YP_005207772.1 DNA-binding response regulator HE999704.1.gene1528. Protein 3e-30 41
PSF113_2366 YP_005207772.1 DNA-binding response regulator NC_012469.1.7686381. Protein 3e-39 41
PSF113_2366 YP_005207772.1 DNA-binding response regulator BAC0638 Protein 4e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSF113_2366 YP_005207772.1 DNA-binding response regulator VFG0596 Protein 4e-32 43
PSF113_2366 YP_005207772.1 DNA-binding response regulator VFG1390 Protein 2e-37 42
PSF113_2366 YP_005207772.1 DNA-binding response regulator VFG1389 Protein 2e-32 42