Gene Information

Name : yopD (PSF113_1789)
Accession : YP_005207209.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : protein YopD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2085584 - 2086141 bp
Length : 558 bp
Strand : +
Note : Type III secretion chaperone protein for YopD (SycD)

DNA sequence : 
TTGGCAGCGTGCCTGTCGGCGTTTTGGCTCAATGCATCGGTCAGCGACGCTGGCGTTTTTTCAGGAGTGTGGCTGATGAG
TCGCGATAACAAACAAGACGAGCAGGTGGCCCTGGACGTCGTCGATGCAGTGCTCGGTGGTGCGGCGTTGAAAGACGTGC
AAGGCATCAGCGACGAGCACATGGGCAGTCTCTATGCCTTCGCCTTTCAGTTCTATGAACAGGGGCGATTGGACGATGCC
GAGAAGTTCTTTCACTTCCTGTGCATCTACGACTTCTACAACAGCCATTACTGGATGGGACTGGCTGCGGTGCACCAGCT
CAAGCAAAACCACCAAAAAGCAATCGACCTGTACGCGATCGCCTTTGCCCAGGGCAAGAACGACTACCGGCCAATGTTGT
ACACCGGCCAATGCCATCTGGCCCTGGGCAAGGTCGGCAAGGCCCGGTTGTGTTTCGAATACGTGCTTGAACAAGCCACG
GAAGACGATCTGCGCGAGCAGGCCAAGGTGTATCTCGACACCCTGGCCCACATGGAACAGCACTGTTCGGAGGACTGA

Protein sequence : 
MAACLSAFWLNASVSDAGVFSGVWLMSRDNKQDEQVALDVVDAVLGGAALKDVQGISDEHMGSLYAFAFQFYEQGRLDDA
EKFFHFLCIYDFYNSHYWMGLAAVHQLKQNHQKAIDLYAIAFAQGKNDYRPMLYTGQCHLALGKVGKARLCFEYVLEQAT
EDDLREQAKVYLDTLAHMEQHCSED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sicA NP_461807.1 secretion chaperone Virulence SPI-1 Protein 3e-38 57
sicA YP_217805.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 3e-38 57
spaT NP_457280.1 unknown function Virulence SPI-1 Protein 3e-38 57
spaT NP_806489.1 hypothetical protein Virulence SPI-1 Protein 3e-38 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yopD YP_005207209.1 protein YopD VFG0547 Protein 9e-39 57
yopD YP_005207209.1 protein YopD VFG2451 Protein 1e-38 51
yopD YP_005207209.1 protein YopD VFG0988 Protein 1e-38 48
yopD YP_005207209.1 protein YopD VFG1769 Protein 6e-34 43