Gene Information

Name : spaQ (PSF113_1786)
Accession : YP_005207206.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : protein SpaQ
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2083377 - 2083631 bp
Length : 255 bp
Strand : +
Note : Surface presentation of antigens protein SpaQ

DNA sequence :
ATGAACGATCTGGTCTATGCCGGCAACAAAACCCTGTACCTGATTCTGCTGATGGTGGCTTGGCCGATCATCGTCGCCAC
GGTGGTGGGCCTGGTGGTCGGGTTGATCCAGACCGTGACGCAGTTGCAGGAACAGACGCTGCCGTTTGGCTTCAAGCTGT
TGGCGGTGGCGGCGTGCCTGTTCCTGCTTTCGGGCTGGTACGGTGAGACCTTGCTGGATTTCAGTCGTGAAGTCATTCGC
CTGGCGCTGAGTTAG

Protein sequence :
MNDLVYAGNKTLYLILLMVAWPIIVATVVGLVVGLIQTVTQLQEQTLPFGFKLLAVAACLFLLSGWYGETLLDFSREVIR
LALS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
spaQ AAS66866.1 SpaQ Not tested SSR-2 Protein 3e-26 77
spaQ NP_457283.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 2e-25 72
spaQ NP_806492.1 virulence-associated secretory protein Virulence SPI-1 Protein 2e-25 72
spaQ NP_461810.1 needle complex export protein Virulence SPI-1 Protein 2e-25 72
spaQ YP_217808.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 2e-25 72
epaQ AAZ31292.1 EpaQ Virulence ETT2 Protein 7e-22 68
ECs3724 NP_311751.1 EpaQ Not tested LIM Protein 1e-21 67
ysaS AAS66847.1 YsaS Not tested SSR-1 Protein 1e-15 58
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 2e-10 44
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 6e-09 44
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 6e-09 44
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 6e-09 44
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 1e-08 41
hrcS ABQ88360.1 HrcS Virulence Hrp PAI Protein 2e-05 41
hrpO AAB05076.1 HrpO Virulence Hrp PAI Protein 2e-05 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
spaQ YP_005207206.1 protein SpaQ VFG0550 Protein 5e-26 72
spaQ YP_005207206.1 protein SpaQ VFG1013 Protein 1e-21 65
spaQ YP_005207206.1 protein SpaQ VFG2454 Protein 4e-17 59
spaQ YP_005207206.1 protein SpaQ VFG1772 Protein 1e-20 59
spaQ YP_005207206.1 protein SpaQ VFG0187 Protein 0.001 45
spaQ YP_005207206.1 protein SpaQ VFG0043 Protein 4e-07 42
spaQ YP_005207206.1 protein SpaQ VFG0395 Protein 8e-10 42