Gene Information

Name : spaP (PSF113_1785)
Accession : YP_005207205.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : protein SpaP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2082709 - 2083368 bp
Length : 660 bp
Strand : +
Note : Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components); Surface presentation of antigens protein SpaP

DNA sequence : 
ATGAATGACGTCTCGCTGATCGCGCTGCTGGCGTTCGCTTCGCTGCTGCCGTTCCTGGTGGCGGCGGGCACCTGCTACAT
CAAGTTCTCCATCGTCTTCGTCATCGTGCGCAACGCGTTGGGCCTGCAGCAGGTGCCATCGAACATGGCGCTCAATGCGA
TTGCCCTGATGCTGGCGATTTTCGTCATGACGCCGGTCATGAAGCAGGGTCATGACTACTACAAGCGCGAGGCGGTGACC
TTTACCGACATCGCGTCGGTGGTGGACTTCGCCGAGAACGGCCTGGGCAGCTACAAGGATTACCTGCGCAAGTACACCGA
CCCGGAGCTGGCGCAGTTTTTCGAGCGGGCCCAGGCGTTCCAGGATGAAACCTACGCGGGCTTGCCTGCCGATGAAGAGG
TTGAGGCCTCGCTGTTTTCGCTGCTGCCGGCCTATGCGCTGAGTGAAATCAAAAGCGCCTTCAAGATCGGCTTCTATCTG
TACCTGCCCTTTGTGATCGTCGACCTGGTGATCTCCAGCATCCTGCTGGCGCTGGGCATGATGATGATGAGCCCGGTGAT
CATTTCCGTGCCGATCAAACTGGTGCTGTTTGTCGCACTGGACGGCTGGGCGTTGCTGTCGACCGGGCTGGTCAAGCAAT
ACCTGACCTTGCTGGCCTAG

Protein sequence : 
MNDVSLIALLAFASLLPFLVAAGTCYIKFSIVFVIVRNALGLQQVPSNMALNAIALMLAIFVMTPVMKQGHDYYKREAVT
FTDIASVVDFAENGLGSYKDYLRKYTDPELAQFFERAQAFQDETYAGLPADEEVEASLFSLLPAYALSEIKSAFKIGFYL
YLPFVIVDLVISSILLALGMMMMSPVIISVPIKLVLFVALDGWALLSTGLVKQYLTLLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 5e-50 65
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 5e-50 65
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 3e-50 65
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 3e-50 65
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 1e-52 64
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 1e-53 64
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 5e-55 62
ysaR AAS66846.1 YsaR Not tested SSR-1 Protein 2e-47 56
escR CAC81847.1 EscR protein Virulence LEE II Protein 9e-34 47
escR CAI43889.1 EscR protein Virulence LEE Protein 9e-34 47
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-33 47
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-33 47
escR AAK26700.1 EscR Virulence LEE Protein 9e-34 47
escR AAL57527.1 EscR Virulence LEE Protein 9e-34 47
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-37 46
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-33 46
escR AAC38369.1 EscR Virulence LEE Protein 5e-33 46
escR AAC31528.1 L0049 Virulence LEE Protein 1e-33 46
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 1e-33 46
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-33 46
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-33 46
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 5e-31 45
unnamed AAL06354.1 EscR Virulence LEE Protein 2e-31 45
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-30 44
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-30 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
spaP YP_005207205.1 protein SpaP VFG1012 Protein 3e-56 67
spaP YP_005207205.1 protein SpaP VFG0551 Protein 2e-50 65
spaP YP_005207205.1 protein SpaP VFG1773 Protein 1e-55 63
spaP YP_005207205.1 protein SpaP VFG2455 Protein 2e-53 61
spaP YP_005207205.1 protein SpaP VFG0188 Protein 5e-35 46
spaP YP_005207205.1 protein SpaP VFG0394 Protein 9e-37 46
spaP YP_005207205.1 protein SpaP VFG0715 Protein 2e-33 46
spaP YP_005207205.1 protein SpaP VFG0827 Protein 5e-34 46
spaP YP_005207205.1 protein SpaP VFG0044 Protein 8e-30 41