Gene Information

Name : yvcR (PSF113_1682)
Accession : YP_005207101.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Resistance
Product : protein YvcR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1958633 - 1959316 bp
Length : 684 bp
Strand : -
Note : ABC transporter ATP-binding protein YvcR

DNA sequence :
ATGGGCTCAAGCATTCTCACCGCGACGGACCTTAGCAAAGTGGTCTCCAGCGCGGAAGGTGAACTGACCATCCTGCACGA
ACTCAGTCTGGAACTGAACAAGGGCGACAGTCTGGCCATCGTTGGCGCGTCCGGTTCCGGCAAATCCACCCTCCTGGGTC
TGCTGGCCGGCCTCGACCTGCCCAGCAGCGGCGAGGTGACGCTCGCCGGCCAGGCCCTCAGCGCACTGGATGAAGACCAG
CGCGCGCGGATCCGCGCCGAGCATGTCGGTTTCGTCTTCCAGTCGTTCCAGTTGCTCGACAGCCTCAACGCACTGGAAAA
CGTCATGCTGCCGCTGGAACTGGACGGGCGCAAGGATGCCCGCGAACGTGCCACGCAACTGTTGCAGCGCGTTGGCCTGG
GCCAGCGCCTGACCCACTCGCCGCGCCAGCTCTCCGGTGGCGAACAGCAACGGGTGGCGATTGCCCGCGCCTTTGCCGCC
GAGCCCGACGTGCTGTTTGCCGACGAACCCACCGGCAACCTCGACAGCCACACCGGCGAGCGCATCAGCGACCTGCTGTT
CGAATTGAACAAGGAACGCGGCACGACCCTGGTGCTGGTGACCCATGATGAACGCCTGGCCCATCGCTGCCGGCGCCTGA
TCCGACTTGAAGCCGGCGAGATGGTCGCCCCTCTGGAGCCTTGA

Protein sequence :
MGSSILTATDLSKVVSSAEGELTILHELSLELNKGDSLAIVGASGSGKSTLLGLLAGLDLPSSGEVTLAGQALSALDEDQ
RARIRAEHVGFVFQSFQLLDSLNALENVMLPLELDGRKDARERATQLLQRVGLGQRLTHSPRQLSGGEQQRVAIARAFAA
EPDVLFADEPTGNLDSHTGERISDLLFELNKERGTTLVLVTHDERLAHRCRRLIRLEAGEMVAPLEP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-20 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-20 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-20 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-20 43
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 7e-18 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yvcR YP_005207101.1 protein YvcR NC_012469.1.7686878. Protein 2e-27 48
yvcR YP_005207101.1 protein YvcR NC_008702.1.4606598. Protein 1e-27 46