Gene Information

Name : fliP (PSF113_1576)
Accession : YP_005206995.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : 3.1.1.3
Position : 1833903 - 1834652 bp
Length : 750 bp
Strand : +
Note : Flagellar biosynthesis protein FliP

DNA sequence : 
ATGCCGTTGCGCATTCTGTTGGCATTGGCCCTGATGCTGGCCGCACCGTTGGCGTTCGCCGCCGATCCGCTGTCGATCCC
GGCGATCACCCTCGGCACCAATGCCGAAGGGGCCCAGGAATACTCGGTCAGCCTGCAGATCCTGCTGATCATGACCGCGC
TGAGTTTCATTCCGGCGTTCGTCATGCTGATGACCAGCTTTACCCGGATCATCATTGTCTTTTCGATCCTGCGCCAGGCC
CTGGGCCTGCAACAGACGCCCTCGAACCAGATCCTCACCGGCATGGCGCTGTTTTTGACCATGTTCATCATGGCGCCGGT
GTTCGACCGGGTGAACCAGGACGCGCTGCAACCCTACCTGGCAGAAAAAATCACCGCTCAGGATGCCGTGGCCAAGGCTG
AAGTGCCGATCAAGGATTTCATGCTGGCGCAGACTCGCAGCAGCGACCTGGAGCTGTTCATGCGCCTGTCCAAGCGCACT
GATATCCCCAGTGCCGATCAGGCGCCGCTGACCATCCTGGTGCCGGCGTTCGTGACGTCCGAGCTCAAGACCGCTTTCCA
GATCGGTTTCATGATTTTCATCCCGTTCCTGATCATTGACCTGGTGGTCGCCAGTATCCTGATGGCCATGGGCATGATGA
TGCTCTCGCCGCTGATCATTTCCCTGCCGTTCAAGATCATGCTGTTTGTGCTGGTGGATGGCTGGGCGCTGATCATCGGT
ACCCTGGCGGGCAGTTTCGGCGGTGTTTAG

Protein sequence : 
MPLRILLALALMLAAPLAFAADPLSIPAITLGTNAEGAQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQA
LGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKITAQDAVAKAEVPIKDFMLAQTRSSDLELFMRLSKRT
DIPSADQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIG
TLAGSFGGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-33 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-30 44
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-30 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-30 44
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 9e-31 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-33 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 5e-33 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 5e-33 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-32 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-32 42
escR CAI43889.1 EscR protein Virulence LEE Protein 7e-33 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-32 42
escR AAC31528.1 L0049 Virulence LEE Protein 7e-33 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 9e-33 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 7e-33 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 9e-33 42
escR AAC38369.1 EscR Virulence LEE Protein 5e-32 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-32 42
escR AAK26700.1 EscR Virulence LEE Protein 7e-33 42
escR AAL57527.1 EscR Virulence LEE Protein 7e-33 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 7e-33 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-32 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-31 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-31 41
unnamed AAL06354.1 EscR Virulence LEE Protein 3e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_005206995.1 protein FliP VFG1259 Protein 2e-91 86
fliP YP_005206995.1 protein FliP VFG2016 Protein 1e-67 60
fliP YP_005206995.1 protein FliP VFG2338 Protein 2e-60 58
fliP YP_005206995.1 protein FliP VFG2494 Protein 2e-63 58
fliP YP_005206995.1 protein FliP VFG0394 Protein 5e-33 43
fliP YP_005206995.1 protein FliP VFG0519 Protein 2e-33 42
fliP YP_005206995.1 protein FliP VFG0827 Protein 4e-33 42
fliP YP_005206995.1 protein FliP VFG0715 Protein 3e-32 42
fliP YP_005206995.1 protein FliP VFG0044 Protein 2e-34 41
fliP YP_005206995.1 protein FliP VFG0188 Protein 4e-34 41