Gene Information

Name : STBHUCCB_p1920 (STBHUCCB_p1920)
Accession : YP_005202805.1
Strain :
Genome accession: NC_016825
Putative virulence/resistance : Resistance
Product : tetracycline resistance protein, class E
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 143189 - 144442 bp
Length : 1254 bp
Strand : -
Note : similar to hypothetical protein PRK12382; 'similar to Tetracycline resistance protein, class E of root UniRef RepID=TCR5_ECOLX'

DNA sequence : 
TTGATAGAGTTATTTTACCACTCCCTATCAGTGATAGAGAAAAGTGAAATGAATAGTTCGACAAAGATCGCATTGGTAAT
TACGTTACTCGATGCCATGGGGATTGGCCTTATCATGCCAGTCTTGCCAACGTTATTACGTGAATTTATTGCTTCGGAAG
ATATCGCTAACCACTTTGGCGTATTGCTTGCACTTTATGCGTTAATGCAGGTTATCTTTGCTCCTTGGCTTGGAAAAATG
TCTGACCGATTTGGTCGGCGCCCAGTGCTGTTGTTGTCATTAATAGGCGCATCGCTGGATTACTTATTGCTGGCTTTTTC
AAGTGCGCTTTGGATGCTGTATTTAGGCCGTTTGCTTTCAGGGATCACAGGAGCTACTGGGGCTGTCGCGGCATCGGTCA
TTGCCGATACCACCTCAGCTTCTCAACGCGTGAAGTGGTTCGGTTGGTTAGGGGCAAGTTTTGGGCTTGGTTTAATAGCG
GGGCCTATTATTGGTGGTTTTGCAGGAGAGATTTCACCGCATAGTCCCTTTTTTATCGCTGCGTTGCTAAATATTGTCGC
TTTCCTTGTGGTTATGTTTTGGTTCCGTGAAACCAAAAATACACGTGATAATACAGATACCGAAGTAGGGGTTGAGACGC
AATCGAATTCGGTATACATCACTTTATTTAAAACGATGCCCATTTTGTTGATTATTTATTTTTCAGCGCAATTGATAGGC
CAAATTCCCGCAACGGTGTGGGTGCTATTTACCGAAAATCGTTTTGGATGGAATAGCATGATGGTTGGCTTTTCATTAGC
GGGTCTTGGTCTTTTACACTCAGTATTCCAAGCCTTTGTGGCAGGAAGAATAGCCACTAAATGGGGCGAAAAAACGGCAG
TACTGCTCGGATTTATTGCAGATAGTAGTGCATTTGCCTTTTTAGCGTTTATATCTGAAGGTTGGTTAGTTTTCCCTGTT
TTAATTTTATTGGCTGGTGGTGGGATCGCTTTACCTGCATTACAGGGAGTGATGTCTATCCAAACAAAGAGTCATCAGCA
AGGTGCTTTACAGGGATTATTGGTGAGCCTTACCAATGCAACCGGTGTTATTGGCCCATTACTGTTTGCTGTTATTTATA
ATCATTCACTACCAATTTGGGATGGCTGGATTTGGATTATTGGTTTAGCGTTTTACTGTATTATTATCCTGCTATCGATG
ACCTTCATGTTAACCCCTCAAGCTCAGGGGAGTAAACAGGAGACAAGTGCTTAG

Protein sequence : 
MIELFYHSLSVIEKSEMNSSTKIALVITLLDAMGIGLIMPVLPTLLREFIASEDIANHFGVLLALYALMQVIFAPWLGKM
SDRFGRRPVLLLSLIGASLDYLLLAFSSALWMLYLGRLLSGITGATGAVAASVIADTTSASQRVKWFGWLGASFGLGLIA
GPIIGGFAGEISPHSPFFIAALLNIVAFLVVMFWFRETKNTRDNTDTEVGVETQSNSVYITLFKTMPILLIIYFSAQLIG
QIPATVWVLFTENRFGWNSMMVGFSLAGLGLLHSVFQAFVAGRIATKWGEKTAVLLGFIADSSAFAFLAFISEGWLVFPV
LILLAGGGIALPALQGVMSIQTKSHQQGALQGLLVSLTNATGVIGPLLFAVIYNHSLPIWDGWIWIIGLAFYCIIILLSM
TFMLTPQAQGSKQETSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA(B) AAL08445.1 tetracycline resistance protein TetA(B) Not tested SRL Protein 2e-163 100
tetA(B) AEZ06045.1 tetracycline efflux protein Not tested Tn6167 Protein 3e-163 99
tetB AEA34667.1 tetracycline resistance determinant Not tested Not named Protein 2e-163 99
BJAB07104_00277 YP_008207742.1 Permeases of the major facilitator superfamily Not tested AbaR25 Protein 1e-162 99
tetA(B) AFH57202.1 tetracycline resistance protein Not tested AbaR4a Protein 7e-171 99
BJAB0868_00281 YP_008211607.1 Permeases of the major facilitator superfamily Not tested AbaR26 Protein 1e-162 99
tetA(B) AEQ20905.1 tetracycline resistance protein Not tested Tn6166 Protein 1e-162 99
ABZJ_00260 YP_005524216.1 Tetracycline resistance protein, class B (TETA(B) ) (Metal-tetracycline/H(+) antiporter) Not tested AbaR22 Protein 3e-165 99
tetA YP_005797160.1 tetracycline resistance protein, class G (TETA(G)) Not tested AbaR4e Protein 2e-159 99
tet(H) YP_005176248.1 tetracycline efflux protein, class H Not tested ICEPmu1 Protein 3e-77 54
tetA CAJ77034.1 Tetracycline resistance protein Not tested AbaR1 Protein 8e-85 52
tet(G) AAK02051.1 tetracycline resistance protein Not tested SGI1 Protein 2e-81 51
tetA(G) ABZ01843.1 TetA(G) Not tested SGI2 Protein 2e-81 51
tetA(G) AGK06974.1 TetA(G) Not tested SGI1 Protein 2e-81 51
tetA(G) AGK07104.1 TetA(G) Not tested SGI1 Protein 2e-81 51
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 1e-69 48
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 8e-70 48
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 8e-70 48
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 8e-70 48
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 1e-70 46
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 1e-70 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E NC_010558.1.6275971. Protein 1e-163 100
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E AB084246.gene.p01 Protein 1e-163 99
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E V00611.gene.p01 Protein 3e-162 99
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E L06798.gene.p01 Protein 3e-91 62
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E AJ250203.gene.p01 Protein 3e-82 59
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E Y19116.gene.p01 Protein 1e-78 55
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E L06940.gene.p01 Protein 1e-79 55
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E Y15510.gene.p01 Protein 5e-78 54
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E CP004022.1.gene2534. Protein 1e-78 54
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E AF038993.gene.p01 Protein 1e-78 54
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E AF133140.gene.p01 Protein 5e-85 52
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E NC_010410.6002612.p0 Protein 5e-85 52
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E AF133139.gene.p01 Protein 2e-83 51
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E NC_011586.7045189.p0 Protein 3e-66 48
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E Y19114.gene.p01 Protein 7e-69 47
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E X75761.gene.p01 Protein 6e-70 47
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E AF070999.gene.p01 Protein 1e-67 46
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E NC_010410.6002597.p0 Protein 7e-71 46
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E CP001485.1.gene2821. Protein 7e-71 46
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E AF534183.gene.p01 Protein 6e-71 46
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E AF121000.gene.p01 Protein 2e-62 45
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E AY264780.2.gene3.p01 Protein 1e-62 44
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E AJ420072.gene.p01 Protein 6e-59 44
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E AY743590.gene.p01 Protein 1e-59 43
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E AF090987.gene.p01 Protein 1e-44 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_p1920 YP_005202805.1 tetracycline resistance protein, class E VFG1036 Protein 1e-163 100