Gene Information

Name : STBHUCCB_p1900 (STBHUCCB_p1900)
Accession : YP_005202803.1
Strain :
Genome accession: NC_016825
Putative virulence/resistance : Resistance
Product : transposon Tn10 tetD protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 141979 - 142395 bp
Length : 417 bp
Strand : -
Note : similar to DNA-binding transcriptional regulator SoxS PRK10219; similar to Transposon Tn10 tetD protein of root UniRef RepID=TETD_ECOLX

DNA sequence : 
ATGTATATTGAACAGCATTCTCGCTATCAAAATAAAGCTAATAACATCCAATTAAGATATGATGATAAGCAGTTTCATAC
AACGGTTATCAAAGATGTTCTATTATGGATTGAACATAATTTAGATCAGTCTTTACTGCTTGATGATGTGGCGAATAAAG
CGGGTTATACCAAGTGGTATTTTCAGCGGCTGTTCAAAAAAGTAACAGGGGTCACACTGGCTAGCTATATTCGTGCTCGT
CGTTTGACGAAAGCGGCTGTTGAGTTGAGGTTGACGAAAAAAACTATCCTTGAGATCGCATTAAAATATCAATTTGATTC
CCAACAATCTTTTACACGTCGATTTAAGTACATTTTTAAGGTTACACCAAGTTATTATCGGCGTAATAAATTATGGGAAT
TGGAGGCAATGCACTGA

Protein sequence : 
MYIEQHSRYQNKANNIQLRYDDKQFHTTVIKDVLLWIEHNLDQSLLLDDVANKAGYTKWYFQRLFKKVTGVTLASYIRAR
RLTKAAVELRLTKKTILEIALKYQFDSQQSFTRRFKYIFKVTPSYYRRNKLWELEAMH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 1e-59 100
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 1e-59 100
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 6e-21 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein NC_010558.1.6276025. Protein 5e-60 100
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein NC_002695.1.914293.p Protein 4e-22 51
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein BAC0371 Protein 4e-22 51
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein CP000034.1.gene4505. Protein 8e-22 51
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein CP001138.1.gene4488. Protein 2e-21 50
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein CP001138.1.gene612.p Protein 8e-22 48
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein CP001918.1.gene327.p Protein 3e-20 47
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein CP000647.1.gene4499. Protein 3e-20 47
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein CP000647.1.gene1624. Protein 1e-21 47
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein CP001918.1.gene2033. Protein 4e-21 45
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein BAC0560 Protein 2e-21 43
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein CP001138.1.gene1637. Protein 3e-21 43
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein NC_002695.1.917339.p Protein 2e-21 43
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein CP000034.1.gene1596. Protein 1e-21 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein VFG1038 Protein 4e-60 100
STBHUCCB_p1900 YP_005202803.1 transposon Tn10 tetD protein VFG0585 Protein 2e-21 50