Gene Information

Name : SSON53_25630 (SSON53_25630)
Accession : YP_005459598.1
Strain : Shigella sonnei 53G
Genome accession: NC_016822
Putative virulence/resistance : Unknown
Product : IS21 ORF2
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4865125 - 4865922 bp
Length : 798 bp
Strand : +
Note : COG1484 DNA replication protein

DNA sequence :
ATGCATGAACTGGAAGTCCTGCTGAGTCGCCTGAAAATGGAGCATCTGAGTTATCACGTTGAAAGCCTGCTGGAACAGGC
AGCTAAAAAAGAGCTGAACTACCGGGAGTTCCTGTGCATGGCGCTACAGCAGGAATGGAACGGCAGGCATCAGCGCGGTA
TGGAGTCCAGGCTGAAGCAGGCTCGTCTGCCGTGGGTCAAAACGCTGGAGCAGTTCGACTTTACCTTCCAGCCGGGCATC
GACCGTAAGGTTGTCCGGGAACTGGCTGGTCTGGCGTTCGTGGAGCGCAGCGAAAACGTGATCCTGCTGGGCCCTCCTGG
TGTCGGAAAAACTCATCTGGCCATAGCTCTTGGCGTGAAAGCGATGGATGCGGGACATCGGGTACTGTTTATGCCACTGG
ACAGACTGATCGCGACACTGATGAAAGCGAAACAGGAAAACCGGCTGGAGCGTCAGCTACAGCAACTGAGTTATGCCCGG
GTGTTGATCCTGGATGAAATAGGCTATCTGCCGATGAACAGAGAGGAAGCCAGTCTGTTCTTCCGGCTACTGAACCGTCG
ATATGAAAAAGCGAGCATCATACTGACGTCAAACAAAGGGTTCGCAGACTGGGGAGAAATGTTCGGAGATCACGTACTGG
CAACAGCGATCCTGGATCGGCTGCTACATCACTCAACCACGCTGAATATCAAAGGAGAGAGTTACCGGTTAAAAGAGAAA
CGTAAAGCTGGAGTGCTGACCAAAAACACAACGCCAATCAGTGATGATGAAATGGTGGAAAGCGGACAGCATCAGTAA

Protein sequence :
MHELEVLLSRLKMEHLSYHVESLLEQAAKKELNYREFLCMALQQEWNGRHQRGMESRLKQARLPWVKTLEQFDFTFQPGI
DRKVVRELAGLAFVERSENVILLGPPGVGKTHLAIALGVKAMDAGHRVLFMPLDRLIATLMKAKQENRLERQLQQLSYAR
VLILDEIGYLPMNREEASLFFRLLNRRYEKASIILTSNKGFADWGEMFGDHVLATAILDRLLHHSTTLNIKGESYRLKEK
RKAGVLTKNTTPISDDEMVESGQHQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 7e-38 47
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 2e-47 46
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 2e-47 46
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 2e-47 46
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 2e-47 46
api84 CAF28558.1 putative transposase Not tested YAPI Protein 2e-47 46
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 3e-47 46
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 2e-47 46
unnamed CAA21402.1 - Not tested HPI Protein 3e-47 46
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 9e-48 46
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 3e-47 46
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 3e-47 46
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 1e-46 45
EC042_4097 YP_006098380.1 putative transposase Not tested Tn2411 Protein 1e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON53_25630 YP_005459598.1 IS21 ORF2 VFG1460 Protein 4e-38 47
SSON53_25630 YP_005459598.1 IS21 ORF2 VFG1606 Protein 1e-47 46
SSON53_25630 YP_005459598.1 IS21 ORF2 VFG1515 Protein 1e-47 46
SSON53_25630 YP_005459598.1 IS21 ORF2 VFG1627 Protein 1e-47 46
SSON53_25630 YP_005459598.1 IS21 ORF2 VFG1663 Protein 7e-47 45