Gene Information

Name : SSON53_25590 (SSON53_25590)
Accession : YP_005459590.1
Strain : Shigella sonnei 53G
Genome accession: NC_016822
Putative virulence/resistance : Unknown
Product : IS1 ORF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4859442 - 4859819 bp
Length : 378 bp
Strand : -
Note : 'COG1662 Transposase and inactivated derivatives, IS1 family'

DNA sequence : 
ATGGACGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGCGCTCGCTGTTTTACGCGTATGACAGTCTCCGGAAGAC
GGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGG
TGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACG
CAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATC
GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAA

Protein sequence : 
MDEQWGYVGAKSRQRSLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYT
QRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 3e-54 99
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 3e-54 99
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 3e-54 99
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 1e-52 94
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 3e-52 92
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 3e-52 92
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 4e-51 91
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 2e-51 91
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 1e-51 91
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 1e-49 89

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON53_25590 YP_005459590.1 IS1 ORF VFG0612 Protein 3e-50 89