Gene Information

Name : SSON53_21790 (SSON53_21790)
Accession : YP_005458850.1
Strain : Shigella sonnei 53G
Genome accession: NC_016822
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4092354 - 4092851 bp
Length : 498 bp
Strand : +
Note : COG2003 DNA repair proteins

DNA sequence : 
TTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTAAAGGGGATTGC
TGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGACGCGGGAATTTT
TACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGGTTATAACGCAT
AGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGGGAAGCGATAAAAATAAACGC
CTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCATTACTGAACGGA
TAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATGTTTCTTTTGCC
GAACGCGGCTGGATTTAA

Protein sequence : 
MLTSEYEQFSGVHGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITH
SRLFSGTLNHVEVHPREIIREAIKINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFA
ERGWI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 7e-26 50
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 7e-26 50
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 4e-26 50
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 1e-23 46
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 2e-22 44
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 4e-22 44
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 3e-22 44
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 3e-22 44
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 4e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON53_21790 YP_005458850.1 hypothetical protein VFG1119 Protein 2e-26 50
SSON53_21790 YP_005458850.1 hypothetical protein VFG0660 Protein 9e-23 44