Gene Information

Name : SSON53_20420 (SSON53_20420)
Accession : YP_005458580.1
Strain : Shigella sonnei 53G
Genome accession: NC_016822
Putative virulence/resistance : Unknown
Product : IS1 transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3839469 - 3839846 bp
Length : 378 bp
Strand : -
Note : 'COG1662 Transposase and inactivated derivatives, IS1 family'

DNA sequence : 
ATGGACGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGAC
GGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGG
TGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACG
CAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATC
GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAA

Protein sequence : 
MDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYT
QRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 3e-55 99
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 3e-55 99
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 3e-55 99
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 1e-53 95
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 4e-53 93
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 4e-53 93
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 4e-52 92
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 2e-52 92
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 2e-52 92
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 1e-50 90

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON53_20420 YP_005458580.1 IS1 transposase VFG0612 Protein 3e-51 90