Gene Information

Name : SSON53_12090 (SSON53_12090)
Accession : YP_005456950.1
Strain : Shigella sonnei 53G
Genome accession: NC_016822
Putative virulence/resistance : Unknown
Product : IS1 ORF2
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2238388 - 2238891 bp
Length : 504 bp
Strand : -
Note : 'COG1662 Transposase and inactivated derivatives, IS1 family'

DNA sequence : 
ATGCCGGGCAACTGCACGCATTATGGGCGTTGGCCTCAACACGATTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGT
AACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAAT
CGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATG
GCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGA
ATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGC
AGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTAT
CTGAACATAAAACACTATCAATAA

Protein sequence : 
MPGNCTHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTM
ATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY
LNIKHYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 2e-74 97
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 2e-74 97
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 2e-74 97
InsB (Tn1) CAJ77072.1 Transposase Not tested AbaR1 Protein 6e-72 96
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 6e-73 93
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 4e-73 93
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 4e-73 93
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 2e-72 92
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 3e-72 92
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 3e-55 91
aec38 AAW51721.1 InsB Not tested AGI-3 Protein 2e-57 91
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 1e-70 90

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON53_12090 YP_005456950.1 IS1 ORF2 VFG0612 Protein 4e-71 90