Gene Information

Name : SSON53_10250 (SSON53_10250)
Accession : YP_005456590.1
Strain : Shigella sonnei 53G
Genome accession: NC_016822
Putative virulence/resistance : Virulence
Product : ABC transport system, inner membrane component SitC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1935676 - 1936533 bp
Length : 858 bp
Strand : +
Note : 'COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components'

DNA sequence : 
ATGAACGTGCTACTGGAACCCTTCAGCTATGAATATATGCTCAATGCGATGTGGGTCTCGGCAATGGTCGGCGGTCTCTG
CGCTTTCCTGTCATGCTATCTGATGCTAAAAGGCTGGTCGCTGATTGGCGATGCGCTGTCGCACTCTATTGTCCCGGGTG
TTGCGGGGGCATATATGCTGGGGCTTCCGTTTTCTCTGGGAGCCTTCTTTTCCGGCGGACTGGCAGCGGGCAGCATGCTG
TTTCTTAACCAACGCACCCGCTTAAAAGAAGATGCCATCATCGGCCTGATCTTCTCGTCCTTTTTTGGCCTGGGGCTGTT
TATGGTGTCATTGAACCCGACATCCGTGAACATTCAGACCATCGTCCTGGGCAATATTCTGGCAATCGATCCGGCGGATA
TCCTGCAACTCACTATCATTGGCATTCTCTCGATCATCGTGCTTTTTTTCAAATGGAAAGATCTTATGGTGACCTTTTTC
GACGAGAATCACGCCCGTGCTATTGGATTACATCCGGGCAGATTAAAAATCCTCTTCTTCACCCTGCTGTCGGTTTCGAC
CGTTGCGGCGCTGCAAACGGTTGGTGCCTTTCTGGTGATCTGTCTGGTGGTGACTCCCGGTGCAACAGCATGGTTGTTAA
CCGATCGTTTTCCCCGCCTGCTCATAATTGCTGTAACTATTGGCAGTGTAACCAGTTTCCTCGGCGCGTGGGTCAGTTAC
TTTCTGGACGGCGCGACAGGTGGAATCATCGTGGTGGCGCAGACACTGCTGTTTCTTTTAGCATTTGTATTTGCGCCCAC
CCATGGACTTTTGGCAAATCGTCGGCGTGCGCATAAAGCGCTGGAGGATCGCTCATGA

Protein sequence : 
MNVLLEPFSYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAAGSML
FLNQRTRLKEDAIIGLIFSSFFGLGLFMVSLNPTSVNIQTIVLGNILAIDPADILQLTIIGILSIIVLFFKWKDLMVTFF
DENHARAIGLHPGRLKILFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLIIAVTIGSVTSFLGAWVSY
FLDGATGGIIVVAQTLLFLLAFVFAPTHGLLANRRRAHKALEDRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-90 87
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-90 87
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-90 87
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-90 87
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-90 87

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON53_10250 YP_005456590.1 ABC transport system, inner membrane component SitC BAC0351 Protein 7e-91 87
SSON53_10250 YP_005456590.1 ABC transport system, inner membrane component SitC BAC0441 Protein 2e-66 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON53_10250 YP_005456590.1 ABC transport system, inner membrane component SitC VFG0527 Protein 6e-91 87