Gene Information

Name : SSON53_09040 (SSON53_09040)
Accession : YP_005456356.1
Strain : Shigella sonnei 53G
Genome accession: NC_016822
Putative virulence/resistance : Unknown
Product : IS1 ORF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1704687 - 1705190 bp
Length : 504 bp
Strand : -
Note : 'COG1662 Transposase and inactivated derivatives, IS1 family'

DNA sequence : 
ATGCCGGGCAACTGCACGCATTATGGGCGTTGGCCTCAACACGATTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGT
AACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAAT
CGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATG
GCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGA
ATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTAAGCGGCATAACCTGAATCTGAGGC
AGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTAT
CTGAACATAAAACACTATCAATAA

Protein sequence : 
MPGNCTHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTM
ATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIKRHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY
LNIKHYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 5e-74 96
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 5e-74 96
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 5e-74 96
InsB (Tn1) CAJ77072.1 Transposase Not tested AbaR1 Protein 2e-71 96
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 2e-72 93
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 1e-72 92
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 1e-72 92
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 8e-55 91
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 7e-72 91
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 1e-71 91
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 4e-70 90
aec38 AAW51721.1 InsB Not tested AGI-3 Protein 4e-57 90

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON53_09040 YP_005456356.1 IS1 ORF VFG0612 Protein 1e-70 90