Gene Information

Name : SSON53_00870 (SSON53_00870)
Accession : YP_005454761.1
Strain : Shigella sonnei 53G
Genome accession: NC_016822
Putative virulence/resistance : Virulence
Product : iron-hydroxamate transporter ATP-binding subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 180157 - 180954 bp
Length : 798 bp
Strand : +
Note : 'COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components'

DNA sequence : 
ATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTT
GCATCCGCTGTCGTTAACCTTTCCTGCCGGGAAAGTGACCGGTCTGATTGGTCACAACGGTTCTGGTAAATCCACTCTGC
TCAAAATGCTTGGTCGTCATCAGCCTCCGTCAGAAGGGGAGATTCTTCTTGATGCCCAGCCGCTGGAAAGCTGGAGCAGC
AAAGCGTTTGCCCGCAAAGTGGCTTATTTGCCGCAGCAGCTTCCTCCGGCAGAAGGGATGACCGTGCGTGAACTGGTGGC
GATTGGTCGTTACCCGTGGCATGGCGCGCTGGGGCGCTTTGGTGCGGCAGATCGCGAAAAGGTCGAGGAAGCTATCTCGC
TGGTTGGCTTAAAACCGCTGGCGCATCGGCTGGTCGATAGTCTCTCTGGCGGCGAACGTCAGCGGGCGTGGATCGCCATG
CTGGTGGCGCAGGATAGCCGTTGTCTGTTGCTCGACGAACCGACTTCGGCGCTGGATATCGCCCACCAGGTTGATGTGCT
GGCGCTGGTGCACCGTTTAAGTCAGGAACGTGGCCTGACGGTCATTGCCGTGTTGCACGATATCAATATGGCGGCACGCT
ACTGTGATTATCTGGTCGCCCTGCGCAGTGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACC
CTCGAAATGATTTATGGCATCCCGATGGGTATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGA

Protein sequence : 
MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS
KAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM
LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRSGEMIAQGTPAEIMRGET
LEMIYGIPMGILPHPAGAAPVSFVY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-44 44
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-44 43
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-45 43
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-39 43
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-39 43
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 8e-39 43
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 8e-39 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON53_00870 YP_005454761.1 iron-hydroxamate transporter ATP-binding subunit BAC0164 Protein 2e-44 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON53_00870 YP_005454761.1 iron-hydroxamate transporter ATP-binding subunit VFG0925 Protein 2e-45 45
SSON53_00870 YP_005454761.1 iron-hydroxamate transporter ATP-binding subunit VFG1042 Protein 2e-44 43