Gene Information

Name : SSON53_06755 (SSON53_06755)
Accession : YP_005455907.1
Strain : Shigella sonnei 53G
Genome accession: NC_016822
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1317430 - 1318053 bp
Length : 624 bp
Strand : +
Note : COG2801 Transposase and inactivated derivatives

DNA sequence :
GTGGCACATATCCGCACTCGCGAAACATATGGAACCCGGCGGCTCCAGACGGAGCTGGCAGAGAATGGCATCATCGTTGG
TCGTGACCGACTGGCACGTCTTCGTAAGGAGCTAAGGCTACGCTGTAAGCAGAAACGCAAGTTCAGAGCGACTACGAACT
CGAACCACAATCTGCCAGTTGCGCCAAATCTGCTGAACCAGACGTTCGCTCCTACAGCACCAAATCAGGTCTGGGTGGCG
GACCTGACGTATGTTGCCACACAGGAGGGATGGTTGTACCTCGCTGGCATCAAAGATGTTTATACGTGCGAAATTGTCGG
CTACGCCATGGGAGAGCGCATGACAAAAGAGCTGACAGGTAAAGCCCTGTTTATGGCGCTCAGGAGCCAGCGCCCACCTG
CCGGGCTAATCCACCACTCTGATCGAGGTTCACAGTACTGCGCATACGATTACCGGGTCATACAGGAGCAGTCTGGTCTG
AAAACATCAATGTCGCGTAAAGGTAACTGTTACGACAACGCTCCGATGGAAAGCTTCTGGGGAACGCTGAAAAATGAGAG
CCTGAGCCACTATCGTTTTAATAACCGGGATGAAGCCATCTCAGTAATACGGGAATACAGGTAA

Protein sequence :
MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNSNHNLPVAPNLLNQTFAPTAPNQVWVA
DLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGL
KTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 9e-81 99
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 3e-80 99
unnamed AAF09030.1 unknown Not tested SHI-O Protein 2e-80 99
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 3e-80 99
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 2e-80 99
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 2e-80 99
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 2e-80 99
unnamed AAF09022.1 unknown Not tested SHI-O Protein 1e-80 99
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 1e-80 99
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-34 44
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-34 44
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-34 44
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 2e-32 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 4e-32 41
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 2e-32 41
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON53_06755 YP_005455907.1 integrase VFG1706 Protein 5e-81 99
SSON53_06755 YP_005455907.1 integrase VFG1631 Protein 7e-33 42